Publications

Hookway T, McDevitt T.  Submitted.  Aggregate formation and suspension culture of human pluripotent stem cells and their progeny. Methods.

Misra M, Shvartsman SY, Zervantonakis IK.  Submitted.  Bifurications in models of gastrulation. Biophysical Journal.

Levin M.  Submitted.  Bioelectric memory: modeling resting potential bistability in amphibian embryos and mammalian cell.

Glaser DE, McCloskey KE, Viney C.  Submitted.  Biomaterial Contributions for Creating Microvasculature in vitro. Tissue Engineering Part B: Reviews.

Anand SV, M Ali Y, Saif T.  Submitted.  Cell culture on microfabricated one-dimensional polymeric structures for bio-actuator and bio-bot applications.

Kim M-C, Whisler JA, Silberberg YR, Kamm RD, H Asada H.  Submitted.  Cell Invasion Dynamics into a Three Dimensional Extracellular Matrix Fibre Network .

Levin M.  Submitted.  Changes to K+-channel-dependent patterning during early neurulation: a mechanism underlying craniofacial anomalies in KCNJ2-associated Andersen-Tawil Syndrome. Human Mutation.

Beck C, Singh T.  Submitted.  Controlled Microfluidics to Examine Growth-Factor induced Migration of Neural Progenitors in the Drosophila Visual System (In Submission).

Rico-Varela J, Singh T.  Submitted.  EGF as a New Therapeutic Target for Medulloblastoma Metastasis.

Rico J.  Submitted.  “EGF as a New Therapeutic Target for Medulloblastoma Metastasis” - In Revision [Cell and Molecular Bioengineering Journal].

Chan V.  Submitted.  Fabrication and characterization of optogenetic, multi-strip cardiac muscles. Lab on a Chip. 15

Chan V.  Submitted.  Fabrication and characterization of optogenetic, multi-strip cardiac muscles.

Beck C, Rico J.  Submitted.  “Microfluidic Measurement of the Effective Diffusivity of Biological Macromolecules” - In Review [ASME Journal of Biomechanical Engineering].

[Anonymous].  Submitted.  Photopatterning of Hydrogel Scaffolds Coupled to Filter Materials Using Stereolithography for Perfused 3D Culture of Hepatocytes.

Levin M.  Submitted.  Re-Membering the Body: applications of cognitive science to the bioengineering of regeneration of limbs and other complex organs. Annual Reviews of Bioengineering.

Levin M.  Submitted.  Selective Depolarization Of Transmembrane Potential Alters Muscle Patterning and Muscle Cell Localization In Embryonic Xenopus Laevi.

Griffiths S, Zhang Y, Nerem RM, Fan Y.  Submitted.  Shear stress and inhibition of DNA methylation regulates endothelial markers in human multipotent mesenchymal stromal cells. Tissue Engineering Part A.

[Anonymous].  Submitted.  Shim, J.B., Ankeny, R.F., Kim, H., Nerem, R.M., and Khang, G., “A Study of a Three-Dimensional PLGA Sponge Containing Natural Polymers Co-Cultured with Endothelial and Mesenchymal Stem Cells as a Tissue Engineering Scaffold,” Biomedical Materials (in.

Osterfield M, Wieschaus E, Schüpbach T, Shvartsman SY.  Submitted.  Versatility in three-dimensional epithelial morphogenesis. Current Biology.

Ceballos S, Kandel M, Sridharan S, Majeed H, Monroy F, Popescu G.  In Press.  Active intracellular transport in metastatic cells studied by SLIM. Journal of Biomedical Optics - Special Section on Quantitative Phase Imaging in Medicine.

Majeed H, Kandel M, Han K, Luo Z, Macias V, Tangella K, Balla A, Popescu G.  In Press.  Breast cancer diagnosis using Spatial Light Interference Microscopy (SLIM). Journal of Biomedical Optics - Special Section on Quantitative Phase Imaging in Medicine.

Nguyen T, Majeed H, Popescu G.  In Press.  Monochromatic and plane wave decomposition of ergodic fields. Optics Letters.

Melhem MR, Park J, Knapp L, Reinkensmeyer L, Cvetkovic C, Flewellyn J, Lee MKyung, Jensen TWolf, Bashir R, Kong H et al..  2016.  3D Printed Stem-Cell-Laden, Microchanneled Hydrogel Patch for the Enhanced Release of Cell-Secreting Factors and Treatment of Myocardial Infarctions. ACS Biomater. Sci. Eng..

Schmidt J, Lee MKyung, Ko E, Jeong JHyun, DiPietro LA, Kong H.  2016.  Alginate Sulfates Mitigate Binding Kinetics of Proangiogenic Growth Factors with Receptors toward Revascularization.. Mol Pharm. 13(7):2148-54.

Adams DS, Uzel SG, Akagi J, Wlodkowic D, Andreeva V, Yelick PC, Devitt-Lee A, Pare JF, Levin M.  2016.  Bioelectric signalling via potassium channels: a mechanism for craniofacial dysmorphogenesis in KCNJ2-associated Andersen-Tawil Syndrome.. The Journal of Physiology. 594(12):3245-3270.

Adams DSpencer, Uzel SGM, Akagi J, Wlodkowic D, Andreeva V, Yelick PCrotty, Devitt-Lee A, Paré J-F, Levin M.  2016.  Bioelectric signalling via potassium channels: a mechanism for craniofacial dysmorphogenesis in KCNJ2-associated Andersen-Tawil Syndrome.. J Physiol. 594(12):3245-70.

Teague BP, Guye P, Weiss R.  2016.  Synthetic Morphogenesis.. Cold Spring Harb Perspect Biol. 8(9)

Ceballos S, Kandel M, Sridharan S, Majeed H, Monroy F, Popescu G.  2015.  Active intracellular transport in metastatic cells studied by spatial light interference microscopy. Journal of Biomedical Optics. 20(11):111209.

Anwar MSabieh, Majeed H, Shaheen A.  2015.  Analyzing combinations of circular birefringence, linear birefringence, and elliptical dichroism in magneto-optical rotators. Journal of Modern Optics. 62(1):75-84.

Zhan M, Crane MM, Entchev EV, Caballero A, de Abreu DAndrea Fer, Ch'ng QL, Lu H.  2015.  Automated Processing of Imaging Data through Multi-tiered Classification of Biological Structures Illustrated Using Caenorhabditis elegans.. PLoS Comput Biol. 11(4):e1004194.

He L, Kniss A, San-Miguel A, Rouse T, Kemp M, Lu H.  2015.  An automated programmable platform enabling multiplex dynamic stimuli delivery and cellular response monitoring for high-throughput suspension single-cell signaling studies. Lab Chip. 15(6):1497-1507.

Kang S-K, Hwang S-W, Yu S, Seo J-H, Corbin EA, Shin J, Wie DSeung, Bashir R, Ma Z, Rogers JA.  2015.  Biodegradable Thin Metal Foils and Spin-On Glass Materials for Transient Electronics. Advanced Functional Materials. 25(12):1789-1797.

Lee MKyung, Rich MH, Lee J, Kong H.  2015.  A bio-inspired, microchanneled hydrogel with controlled spacing of cell adhesion ligands regulates 3D spatial organization of cells and tissue. Biomaterials. 58:26-34.

Lee MKyung, Rich MH, Lee J, Kong H.  2015.  A bio-inspired, microchanneled hydrogel with controlled spacing of cell adhesion ligands regulates 3D spatial organization of cells and tissue.. Biomaterials. 58:26-34.

Lee MKyung, Rich MH, Baek K, Lee J, Kong H.  2015.  Bioinspired tuning of hydrogel permeability-rigidity dependency for 3D cell culture.. Sci Rep. 5:8948.

Lee MKyung, Rich MH, Baek K, Lee J, Kong H.  2015.  Bioinspired Tuning of Hydrogel Permeability-Rigidity Dependency for 3D Cell Culture. Scientific Reports. 5:8948.

Corbin EA, Kong F, Lim CTeck, King WP, Bashir R.  2015.  Biophysical properties of human breast cancer cells measured using silicon MEMS resonators and atomic force microscopy.. Lab Chip. 15(3):839-47.

Anand SV, M Ali Y, Saif T.  2015.  Cell culture on microfabricated one-dimensional polymeric structures for bio-actuator and bio-bot applications. Lab Chip. 15(8):1879-1888.

Kim M-C, Whisler J, Silberberg YR, Kamm RD, H Asada H.  2015.  Cell Invasion Dynamics into a Three Dimensional Extracellular Matrix Fibre Network.. PLoS Comput Biol. 11(10):e1004535.

Mir M, Kim T, Majumder A, Xiang M, Wang R, S Liu C, Gillette MU, Stice S, Popescu G.  2015.  Corrigendum: Label-Free Characterization of Emerging Human Neuronal Networks.. Sci Rep. 5:11311.

Cambria E, Renggli K, Ahrens CC, Cook CD, Kroll C, Krueger AT, Imperiali B, Griffith LG.  2015.  Covalent Modification of Synthetic Hydrogels with Bioactive Proteins via Sortase-Mediated Ligation.. Biomacromolecules. 16(8):2316-26.

Jain A.  2015.  Development of microfluidic devices for the manipulation of neuronal synapses. Microfluidic and Compartmentalized Platforms for Neurobiological Research. :127-136.

Kim H, Han JWoong, Lee JYoon, Choi YJin, Sohn Y-D, Song M, Yoon Y-S.  2015.  Diabetic Mesenchymal Stem Cells Are Ineffective for Improving Limb Ischemia Due to Their Impaired Angiogenic Capability.. Cell Transplant. 24(8):1571-84.

Majeed H, Kandel M, Han K, Luo Z, Macias V, Tangella K, Balla A, Popescu G.  2015.  Diagnosis of breast cancer biopsies using quantitative phase imaging. SPIE Photonics West: BiOS - Quantitative Phase Imaging. 9336

Lim B, Dsilva CJ, Levario TJ, Lu H, Schüpbach T, Kevrekidis IG, Shvartsman SY.  2015.  Dynamics of Inductive ERK Signaling in the Drosophila Embryo.. Curr Biol. 25(13):1784-90.

Pai VP, Lemire JM, Paré J-F, Lin G, Chen Y, Levin M.  2015.  Endogenous gradients of resting potential instructively pattern embryonic neural tissue via Notch signaling and regulation of proliferation.. J Neurosci. 35(10):4366-85.

Levin M.  2015.  Endogenous gradients of resting potential instructively pattern embryonic neural tissue via Notch signaling and regulation of proliferation. Journal of Neuroscience.

Chien S, Bashir R, Nerem RM, Pettigrew R.  2015.  Engineering as a new frontier for translational medicine.. Sci Transl Med. 7(281):281fs13.

Lee S, Valmikinathan CM, Byun J, Kim S, Lee G, Mokarram N, S Pai B, Um E, Bellamkonda RV, Yoon Y-S.  2015.  Enhanced therapeutic neovascularization by CD31-expressing cells and embryonic stem cell-derived endothelial cells engineered with chitosan hydrogel containing VEGF-releasing microtubes.. Biomaterials. 63:158-67.

Chan V, Neal D, Uzel SGM, Kim H.Y., Bashir R, H Asada H.  2015.  Fabrication and characterization of optogenetic, multi-strip cardiac muscles. Lab on a Chip. (15)

Chan V, Neal DM, Uzel SGM, Kim H, Bashir R, H Asada H.  2015.  Fabrication and characterization of optogenetic, multi-strip cardiac muscles.. Lab Chip. 15(10):2258-68.

Chan V, Neal D, Uzel SGM, Kim H, Bashir R, H Asada H.  2015.  Fabrication and characterization of optogenetic, multi-strip cardiac muscles. Lab Chip. 15(10):2258-2268.

Gol EAydin, Bartocci E.  2015.  A Formal Methods Approach to Pattern Synthesis in Reaction Diffusion Systems. 53rd IEEE Conference on Decision and Control (CDC), Los Angeles, CA 2014.

Entchev EV, Patel DS, Zhan M, Steele AJ, Lu H, Ch'ng QL.  2015.  A gene-expression-based neural code for food abundance that modulates lifespan.. Elife. 4:e06259.

Lee S-J, Park C, Lee JYoon, Kim S, Kwon PJae, Kim W, Jeon YHeui, Lee E, Yoon Y-S.  2015.  Generation of pure lymphatic endothelial cells from human pluripotent stem cells and their therapeutic effects on wound repair.. Sci Rep. 5:11019.

Lee MKyung, Rich MH, Shkumatov A, Jeong JHyun, Boppart MD, Bashir R, Gillette M.U., Lee J, Kong H.  2015.  Glacier moraine formation-mimicking colloidal particle assembly in microchanneled, bioactive hydrogel for guided vascular network construction.. Adv Healthc Mater. 4(2):195-201.

Lee MKyung, Rich MH, Shkumatov A, Jeong JHyun, Boppart MD, Bashir R, Gillette M.U., Lee J, Kong H.  2015.  Glacier Moraine Formation-Mimicking Colloidal Particle Assembly in Microchanneled, Bioactive Hydrogel for Guided Vascular Network Construction. Advanced Healthcare Materials. 4(2):195-201.

Nguyen T, Majeed H, Edwards C, Do M, Goddard L, Popescu G.  2015.  Halo-free quantitative phase imaging with partially coherent illumination. SPIE Photonics West: BiOS - Quantitative Phase Imaging. 9336

Majeed H, Kandel M, Bhaduri B, Han K, Luo Z, Tangella K, Popescu G.  2015.  High throughput imaging of blood smears using white light diffraction phase microscopy. SPIE Photonics West: BiOS - Quantitative Phase Imaging. 9336

Chavez A, Scheiman J, Vora S, Pruitt BW, Tuttle M, Iyer EPR, Lin S, Kiani S, Guzman CD, Wiegand DJ et al..  2015.  Highly efficient Cas9-mediated transcriptional programming.. Nat Methods. 12(4):326-8.

Belair DG, Whisler JA, Valdez J, Velazquez J, Molenda JA, Vickerman V, Lewis R, Daigh C, Hansen TD, Mann DA et al..  2015.  Human vascular tissue models formed from human induced pluripotent stem cell derived endothelial cells.. Stem Cell Rev. 11(3):511-25.

Gray WD, French KM, Ghosh-Choudhary S, Maxwell JT, Brown ME, Platt MO, Searles CD, Davis ME.  2015.  Identification of therapeutic covariant microRNA clusters in hypoxia-treated cardiac progenitor cell exosomes using systems biology.. Circ Res. 116(2):255-63.

Baek K, Liang J, Lim WTing, Zhao H, Kim DHyun, Kong H.  2015.  In Situ Assembly of Antifouling/Bacterial Silver Nanoparticle-Hydrogel Composites with Controlled Particle Release and Matrix Softening. ACS Applied Materials & Interfaces. 7(28):15359-15367.

Baek K, Clay N, Qin EC, Sullivan KM, Kim DHyun, Kong H.  2015.  In situ assembly of the collagen–polyacrylamide interpenetrating network hydrogel: Enabling decoupled control of stiffness and degree of swelling. European Polymer Journal.

Lobo D, Levin M.  2015.  Inferring regulatory networks from experimental morphological phenotypes: a computational method reverse-engineers planarian regeneration.. PLoS Comput Biol. 11(6):e1004295.

Kundaje A, Meuleman W, Ernst J, Bilenky M, Yen A, Heravi-Moussavi A, Kheradpour P, Zhang Z, Wang J, Ziller MJ et al..  2015.  Integrative analysis of 111 reference human epigenomes.. Nature. 518(7539):317-30.

Rizki G, Boyer LA.  2015.  Lncing epigenetic control of transcription to cardiovascular development and disease.. Circ Res. 117(2):192-206.

Pai VP, Lemire JM, Chen Y, Lin G, Levin M.  2015.  Local and long-range endogenous resting potential gradients antagonistically regulate apoptosis and proliferation in the embryonic CNS.. Int J Dev Biol. 59(7-9):327-40.

Shkumatov A, Thompson M, Choi KM, Sicard D, Baek K, Kim DHyun, Tschumperlin DJ, Prakash YS, Kong H.  2015.  Matrix stiffness-modulated proliferation and secretory function of the airway smooth muscle cells.. Am J Physiol Lung Cell Mol Physiol. 308(11):L1125-35.

Neal D, Sakar MSelman, Bashir R, Chan V, Asada HHarry.  2015.  Mechanical Characterization and Shape Optimization of Fascicle-Like 3D Skeletal Muscle Tissues Contracted with Electrical and Optical Stimuli.. Tissue Eng Part A. 21(11-12):1848-58.

Neal D, Sakar MSelman, Bashir R, Chan V, H Asada H.  2015.  Mechanical Characterization and Shape Optimization of Fascicle-Like 3D Skeletal Muscle Tissues Contracted with Electrical and Optical Stimuli. Tissue Engineering Part A. 21(11-12):1848-1858.

Baek K, Clay N, Qin E, Sullivan K, Kong H.  2015.  mIn situ assembly of the collagen-polyacrylamide interpenetrating network hydrogel: Enabling decoupled control of stiffness and degree of swelling. European Polymer Journal.

Li Y., Jiang Y., Chen H., Liao W., Weiss R, Xie Z..  2015.  Modular construction of mammalian gene circuits using TALE transcriptional repressors. Nature Chemical Biology. (February 2, 2015)

Park K, Mehrnezhad A, Corbin EA, Bashir R.  2015.  Optomechanical measurement of the stiffness of single adherent cells.. Lab Chip. 15(17):3460-4.

Neiman JAShepard, Raman R, Chan V, Rhoads MG, Raredon MSam B, Velazquez JJ, Dyer RL, Bashir R, Hammond PT, Griffith LG.  2015.  Photopatterning of Hydrogel Scaffolds Coupled to Filter Materials Using Stereolithography for Perfused 3D Culture of Hepatocytes. Biotechnology and Bioengineering. 112(4):777-787.

Neiman JAShepard, Raman R, Chan V, Rhoads MG, Raredon MSam B, Velazquez JJ, Dyer RL, Bashir R, Hammond PT, Griffith LG.  2015.  Photopatterning of hydrogel scaffolds coupled to filter materials using stereolithography for perfused 3D culture of hepatocytes.. Biotechnol Bioeng. 112(4):777-87.

Gallegos-Cárdenas A, Webb R, Jordan E, West R, West FD, Yang J-Y, Wang K, Stice SL.  2015.  Pig Induced Pluripotent Stem Cell-Derived Neural Rosettes Developmentally Mimic Human Pluripotent Stem Cell Neural Differentiation.. Stem Cells Dev. 24(16):1901-11.

Sridharan S, Macias V, Tangella K, Kajdacsy-Balla é, Popescu G.  2015.  Prediction of Prostate Cancer Recurrence Using Quantitative Phase Imaging. Scientific Reports. 5:9976.

Sridharan S, Macias V, Tangella K, Kajdacsy-Balla A, Popescu G.  2015.  Prediction of prostate cancer recurrence using quantitative phase imaging.. Sci Rep. 5:9976.

Mallis RJ, Bai K, Arthanari H, Hussey RE, Handley M, Li Z, Chingozha L, Duke-Cohan JS, Lu H, Wang J-H et al..  2015.  Pre-TCR ligand binding impacts thymocyte development before αβTCR expression.. Proc Natl Acad Sci U S A. 112(27):8373-8.

White DE, Sylvester JB, Levario TJ, Lu H, J Streelman T, McDevitt TC, Kemp ML.  2015.  Quantitative multivariate analysis of dynamic multicellular morphogenic trajectories.. Integr Biol (Camb). 7(7):825-33.

Sridharan S, Katz A, Soto-Adames F, Popescu G.  2015.  Quantitative phase imaging of arthropods.. J Biomed Opt. 20(11):111212.

Alberts B, Cicerone RJ, Fienberg SE, Kamb A, McNutt M, Nerem RM, Schekman R, Shiffrin R, Stodden V, Suresh S et al..  2015.  SCIENTIFIC INTEGRITY. Self-correction in science at work.. Science. 348(6242):1420-2.

Haghighi I, Jones A.  2015.  SpaTeL: A Novel Spatial-Temporal Logic and Its Applications to Networked Systems. Hybrid Systems: Computation and Control.

Dsilva CJ, Lim B, Lu H, Singer A, Kevrekidis IG, Shvartsman SY.  2015.  Temporal ordering and registration of images in studies of developmental dynamics.. Development. 142(9):1717-24.

O'Meara CC, Wamstad JA, Gladstone RA, Fomovsky GM, Butty VL, Shrikumar A, Gannon JB, Boyer LA, Lee RT.  2015.  Transcriptional reversion of cardiac myocyte fate during mammalian cardiac regeneration.. Circ Res. 116(5):804-15.

O'Meara CC, Wamstad JA, Gladstone RA, Fomovsky GM, Butty VL, Shrikumar A, Gannon JB, Boyer LA, Lee RT.  2015.  Transcriptional reversion of cardiac myocyte fate during mammalian cardiac regeneration.. Circ Res. 116(5):804-15.

Shaheen A, Majeed H, Anwar MSabieh.  2015.  Ultralarge magneto-optic rotations and rotary dispersion in terbium gallium garnet single crystal. Applied Optics. 54(17):5549.

Ahrens CC, M Welch E, Griffith LG, Hammond PT.  2015.  Uncharged Helical Modular Polypeptide Hydrogels for Cellular Scaffolds.. Biomacromolecules. 16(12):3774-83.

Ju L, Chen Y, Zhou F, Lu H, Cruz MA, Zhu C.  2015.  Von Willebrand factor-A1 domain binds platelet glycoprotein Ibα in multiple states with distinctive force-dependent dissociation kinetics.. Thromb Res. 136(3):606-12.

Rich MH, Lee MKyung, Marshall N, Clay N, Chen J, Mahmassani Z, Boppart M, Kong H.  2015.  Water-Hydrogel Binding Affinity Modulates Freeze-Drying-Induced Micropore Architecture and Skeletal Myotube Formation.. Biomacromolecules. 16(8):2255-64.

Rich MH, Lee MKyung, Marshall N, Clay N, Chen J, Mahmassani Z, Boppart M, Kong H.  2015.  Water–Hydrogel Binding Affinity Modulates Freeze-Drying-Induced Micropore Architecture and Skeletal Myotube Formation. Biomacromolecules. 16(8):2255-2264.

Bajaj P, Schweller RM, Khademhosseini A, West JL, Bashir R.  2014.  3D Biofabrication Strategies for Tissue Engineering and Regenerative Medicine. Annual Review of Biomedical Engineering. 16

Rowlands CJ, Wu J, Uzel SGM, Klein O, Evans CL, So PTC.  2014.  3D-resolved targeting of photodynamic. Laser Physics Letters.

Davidsohn N, Beal J, Kiana S, Adler A, Yaman F, Li Y, Xie Z, Weiss R.  2014.  Accurate Predictions of Genetic Circuit Behavior from Part Characterization and Modular Composition. ACS Synthetic Biology.

Ahmed WW, Saif T.  2014.  Active transport of vesicles in neurons is modulated by mechanical tension. Scientific Reports. 4(4481)

H Asada H, Ong S, Dauwels J., Ang M..  2014.  A Bayesian Filtering Approach to Incorporate 2D/3D Time-lapse Confocal Images for Tracking Angiogenic Sprouting Cells Interacting with the Gel Matrix. Medical Image Analysis. 18(1):227.

Mustard J, Levin M.  2014.  Bioelectrical mechanisms for programming growth and form: taming physiological networks for soft body robotics. Soft Robotics.

Salimath AS, García AJ.  2014.  Biofunctional hydrogels for skeletal muscle constructs.. J Tissue Eng Regen Med.

Madhukar A, Perlitz D., Grigola M, Gai D, K. Hsia J.  2014.  Bistable characteristics of thick-walled axisymmetric domes. International Journal of Solids and Structures.

K S, EJ J, RL W, Stice SL.  2014.  Bone Fracture Putty: a combined lentiviral and stem cell approach.. UGA Center for Undergraduate Research Oportunities Conference.

Mow VC, Butler DL, Nerem RM.  2014.  A brief history of USNCB: motivation and formation.. J Biomech Eng. 136(6):060301.

Singh T, Kothapalli C, Varma D, Nicoll SB, Vazquez M.  2014.  Carboxymethylcellulose hydrogels support central nervous system-derived tumor-cell chemotactic migration: comparison with conventional extracellular matrix macromolecules.. J Biomater Appl. 29(3):433-41.

Herath S., Du Y., Wang D., Liao K., Wang Q., Chen P.C.Y., H Asada H.  2014.  Characterization of uniaxial stiffness of extracellular matrix embedded with magnetic beads via bio-conjugation and under the influence of an external magnetic field. Journal of the Mechanical Behavior of Biomedical Materials. 30:265.

Iyer R., Wang T.A., Gillette M.U..  2014.  Circadian gating of neuronal functionality: a basis for iterative metaplasticity. Frontiers in Systems Neuroscience. 8

Quadir MA.  2014.  Clickable Synthetic Polypeptides--Routes to New Highly Adaptive Biomaterials. Chemistry of Materials. 26(1)

Sa S, Wong L, McCloskey KE.  2014.  Combinatorial fibronectin and laminin signaling promote highly efficient cardiac differentiation of human embryonic stem cells.. Biores Open Access. 3(4):150-61.

Southey BR, Lee JEun, Zamdborg L, Atkins N, Mitchell JW, Li M, Gillette MU, Kelleher NL, Sweedler JV.  2014.  Comparing label-free quantitative peptidomics approaches to characterize diurnal variation of peptides in the rat suprachiasmatic nucleus.. Anal Chem. 86(1):443-52.

Whisler JA, Chen MB, Kamm RD.  2014.  Control of perfusable microvascular network morphology using a multiculture microfluidic system.. Tissue Eng Part C Methods. 20(7):543-52.

Callihan P, Ali MW, Salazar H, Quach N, Wu X, Stice SL, Hooks SB.  2014.  Convergent regulation of neuronal differentiation and Erk and Akt kinases in human neural progenitor cells by lysophosphatidic acid, sphingosine 1-phosphate, and LIF: specific roles for the LPA1 receptor.. ASN Neuro. 6(6)

Kamm RD, Bashir R.  2014.  Creating living cellular machines.. Ann Biomed Eng. 42(2):445-59.

Edwards C, Zhou R, Hwang S-W, McKeown SJ, Wang K, Bhaduri B, Ganti R, Yunker PJ, Yodh AG, Rogers JA et al..  2014.  Diffraction phase microscopy: monitoring nanoscale dynamics in materials science [Invited]. Applied Optics. 53(27):G33.

Bhaduri B., Edwards C, Pham H., Zhou R, Nguyen TH, Goddard L, Popescu G.  2014.  Diffraction phase microscopy: principles and applications in materials and life sciences. Adv. Opt. Photon.. 6(1):57-119.

Hwang S-W, Park G, Edwards C, Corbin EA, Kang S-K, Cheng H, Song J-K, Kim J-H, Yu S, Ng J et al..  2014.  Dissolution chemistry and biocompatibility of single-crystalline silicon nanomembranes and associated materials for transient electronics.. ACS Nano. 8(6):5843-51.

Wamstad J, Demuren OO, Boyer LA.  2014.  Distal enhancers: new insights into heart development and disease.. Trends in Cell Biology. 24(5)

Wamstad J, Wang X, Demuren OO, Boyer LA.  2014.  Distal enhancers: new insights into heart development and disease.. Trends Cell Biol. 24(5):294-302.

Sharghi-Namini S., Tan E., Ong S, Ge R, H Asada H.  2014.  Dll4-containing exosomes induce capillary sprout retraction in a 3D microenvironment. Nature, Scientific Reports. 4:8.

Shekaran A, Shoemaker JT, Kavanaugh TE, Lin AS, LaPlaca MC, Fan Y, Guldberg RE, García AJ.  2014.  The effect of conditional inactivation of beta 1 integrins using twist 2 Cre, Osterix Cre and osteocalcin Cre lines on skeletal phenotype.. Bone. 68:131-41.

Edwards C, Bhaduri B., Nguyen TH, Griffin B.G, Pham H., Kim T, Popescu G, Goddard L.  2014.  Effects of spatial coherence in diffraction phase microscopy. Optics Express. 22(5)

Levin M.  2014.  Endogenous bioelectrical networks store non-genetic patterning information during development and regeneration.. J Physiol. 592(11):2295-305.

Kinney MA, Hookway TA, Wang Y, McDevitt TC.  2014.  Engineering three-dimensional stem cell morphogenesis for the development of tissue models and scalable regenerative therapeutics. Annals of Biomedical Engineering. 42(2)):352-67.

Edwards C, Bhaduri B, Griffin BG, Goddard L, Popescu G.  2014.  Epi-illumination diffraction phase microscopy with white light.. Opt Lett. 39(21):6162-5.

Andukuri A, Min IJ, Hwang P, Alexander G, Marshall LE, Berry JL, Wick TM, Joung YKi, Yoon Y-S, Brott BC et al..  2014.  Evaluation of the effect of expansion and shear stress on a self-assembled endothelium mimicking nanomatrix coating for drug eluting stents in vitro and in vivo.. Biofabrication. 6(3):035019.

Hassan U, Watkins NN, Edwards C, Bashir R.  2014.  Flow Metering Characterization within an Electrical Cell Counting Microfluidic Device. Lab Chip. :-.

Dunn J, Qiu H, Kim S, Jjingo D, Hoffman R, Kim CWoo, Jang I, Son DJu, Kim D, Pan C et al..  2014.  Flow-dependent epigenetic DNA methylation regulates endothelial gene expression and atherosclerosis.. J Clin Invest. 124(7):3187-99.

Nsiah B.A., Ahsan T., Griffiths S, Cooke M, Nerem RM, McDevitt TC.  2014.  Fluid Shear Stress Pre-Conditioning Promotes Endothelial Morphogenesis of Embryonic Stem Cells within Embryoid Bodies. Tissue Eng Part A. 20(5-6):954-965.

Neal D, Sakar MSelman, Ong S, H Asada H.  2014.  Formation of Elongated Fascicle-Inspired 3D Tissues Consisting of High-Density, Aligned Cells Using Sacrificial Outer Molding. Lab on a Chip. (10)

Bao G, Nerem RM.  2014.  Frontiers in Bioengineering Research 42(2): 241-242, 2014.. Annals of Biomedical Engineering .

Jeon JS, Bersini S, Whisler JA, Chen MB, Dubini G, Charest JL, Moretti M, Kamm RD.  2014.  Generation of 3D functional microvascular networks with human mesenchymal stem cells in microfluidic systems. Integr. Biol.. 6(5):555-563.

Jeon JS, Bersini S, Whisler JA, Chen MB, Dubini G, Charest JL, Moretti M, Kamm RD.  2014.  Generation of 3D functional microvascular networks with human mesenchymal stem cells in microfluidic systems.. Integr Biol (Camb). 6(5):555-63.

Loring J., McDevitt TC, Palecek S., Schaffer D., Zandstra P., Nerem RM.  2014.  A Global Assessment of Stem Cell Engineering. Tissue Engineering, Part A. 20(19-20)

Bajaj P, Rivera JA, Marchwiany D, Solovyeva V, Bashir R.  2014.  Graphene-Based Patterning and Differentiation of C2C12 Myoblasts. Advanced Healthcare Materials.

Qu Q, Li D, Louis KR, Li X, Yang H, Sun Q, Crandall SR, Tsang S, Zhou J, Cox CL et al..  2014.  High-efficiency motor neuron differentiation from human pluripotent stem cells and the function of Islet-1.. Nat Commun. 5:3449.

Mir M, Bergamaschi A, Katzenellenbogen BS, Popescu G.  2014.  Highly sensitive quantitative imaging for monitoring single cancer cell growth kinetics and drug response.. PLoS One. 9(2):e89000.

Medrzycki M, Zhang Y, Zhang W, Cao K, Pan C, Lailler N, McDonald JF, Bouhassira EE, Fan Y.  2014.  Histone h1.3 suppresses h19 noncoding RNA expression and cell growth of ovarian cancer cells.. Cancer Res. 74(22):6463-73.

Belair DG, Whisler JA, Valdez J, Velazquez J, Molenda JA, Vickerman V, Lewis R, Daigh C, Hansen TD, Mann DA et al..  2014.  Human vascular tissue models formed from human induced pluripotent stem cell derived endothelial cells.

Edwards C, McKeown SJ, Zhou J, Popescu G, Goddard L.  2014.  In situ measurements of the axial expansion of palladium microdisks during hydrogen exposure using diffraction phase microscopy. Optical Materials Express. 4(12):2559.

Park YK, Tu TY, Lim SH, Clement IJM, Yang SY, Kamm RD.  2014.  In Vitro Microvessel Growth and Remodeling within a Three-Dimensional Microfluidic Environment. Cellular and Molecular Bioengineering. 7(1):15-25.

Lu Y, West FD, Jordan BJ, Jordan ET, West RC, Yu P, He Y, Barrios MA, Zhu Z, Petitte JN et al..  2014.  Induced pluripotency in chicken embryonic fibroblast results in a germ cell fate.. Stem Cells Dev. 23(15):1755-64.

Okosun J, Bödör C, Wang J, Araf S, Yang C-Y, Pan C, Boller S, Cittaro D, Bozek M, Iqbal S et al..  2014.  Integrated genomic analysis identifies recurrent mutations and evolution patterns driving the initiation and progression of follicular lymphoma.. Nat Genet. 46(2):176-81.

P J, Stice SL.  2014.  Integrating of Human Neural Progenitor Cells into a Developing Chicken Embryo for a Toxicology Model.. UGA Center for Undergraduate Research Opportunities (CURO) Symposium .

Kim T, Goddard L, Popescu G.  2014.  Inverse scattering solutions using low-coherence light.. Opt Lett. 39(15):4494-7.

Mir M, Kim T, Majumder A, Xiang M, Wang R, S Liu C, Gillette MU, Stice S, Popescu G.  2014.  Label-free characterization of emerging human neuronal networks.. Sci Rep. 4:4434.

Lobo D, Solano M, Bubenik GA, Levin M.  2014.  A linear-encoding model explains the variability of the target morphology in regeneration.. J R Soc Interface. 11(92):20130918.

Mishra D, Rivera P, Lin A, Del Vecchio D, Weiss R.  2014.  A load driver device for engineering modularity in biological networks.. Nature Biotechnology.

Ang XMin, Lee MHC, Blocki A, Chen C, Ong LLSharon, H Asada H, Sheppard A, Raghunath M.  2014.  Macromolecular crowding amplifies adipogenesis of human bone marrow-derived mesenchymal stem cells by enhancing the pro-adipogenic microenvironment.. Tissue Eng Part A. 20(5-6):966-81.

Rich MH, Lee MKyung, Baek K, Jeong JHyun, Kim DHyun, Millet LJ, Bashir R, Kong H.  2014.  Material-mediated proangiogenic factor release pattern modulates quality of regenerated blood vessels.. J Control Release. 196:363-9.

Rich MH, Lee MKyung, Baek K, Jeong JHyun, Kim DHyun, Millet LJ, Bashir R, Kong H.  2014.  Material-mediated proangiogenic factor release pattern modulates quality of regenerated blood vessels. Journal of Controlled Release. 196:363-369.

Shkumatov A.  2014.  Matrix rigidity-modulated cardiovascular organoid formation from embryoid bodies..

Shkumatov A, Baek K, Kong H.  2014.  Matrix rigidity-modulated cardiovascular organoid formation from embryoid bodies.. PLoS One. 9(4):e94764.

Corbin EA, Millet LJ, Keller KR, King WP, Bashir R.  2014.  Measuring physical properties of neuronal and glial cells with resonant microsensors.. Anal Chem. 86(10):4864-72.

Polacheck WJ, German AE, Mammoto A, Ingber DE, Kamm RD.  2014.  Mechanotransduction of fluid stresses governs 3D cell migration.. Proc Natl Acad Sci U S A. 111(7):2447-52.

Kinney MA, Saeed R, McDevitt TC.  2014.  Mesenchymal morphogenesis of embryonic stem cells dynamically modulates the biophysical microtissue niche.. Sci Rep. 4:4290.

Uzel SGM, Pavesi A, Kamm RD.  2014.  Microfabrication and microfluidics for muscle tissue models. Progress in Biophysics and Molecular Biology.

Uzel SGM, Pavesi A, Kamm RD.  2014.  Microfabrication and microfluidics for muscle tissue models. Progress in Biophysics and Molecular Biology. 115(2-3):279-293.

Uzel SGM, Pavesi A, Kamm RD.  2014.  Microfabrication and microfluidics for muscle tissue models.. Prog Biophys Mol Biol. 115(2-3):279-93.

Headen DM, Aubry G, Lu H, García AJ.  2014.  Microfluidic-based generation of size-controlled, biofunctionalized synthetic polymer microgels for cell encapsulation.. Adv Mater. 26(19):3003-8.

Corbin EA, Dorvel BR, Millet LJ, King WP, Bashir R.  2014.  Micro-patterning of mammalian cells on suspended MEMS resonant sensors for long-term growth measurements.. Lab Chip. 14(8):1401-4.

Nguyen DC, Hookway TA, Wu Q, Jha R, Preininger M, Chen X, Easley CA, Deshpande SR, Maher K, Spearman P et al..  2014.  Microscale generation of cardiospheres promotes robust enrichment of cardiomyocytes derived from human pluripotent stem cells. Stem Cell Reports.

D N, T H, Q W, R J, M P, X C, C E, P S, S D, K M et al..  2014.  Microscale Generation of Cardiospheres Promotes Robust Enrichment of Cardiomyocytes Derived from Human Pluripotent Stem Cells. Stem Cell Reports. 3(2)

Boopathy AV, Che PLin, Somasuntharam I, Fiore VF, E Cabigas B, Ban K, Brown ME, Narui Y, Barker TH, Yoon Y-S et al..  2014.  The modulation of cardiac progenitor cell function by hydrogel-dependent Notch1 activation.. Biomaterials. 35(28):8103-12.

Levin M.  2014.  Molecular Bioelectricity: how endogenous voltage potentials control cell behavior and instruct pattern regulation in vivo. Molecular Biology of the Cell.

Grigola M, Dyck C., S Babacan D, Joaquin D., K. Hsia J.  2014.  Myoblast alignment on 2D wavy patterns: dependence on feature characteristics and cell-cell interaction.. Biotechnol Bioeng. 111(8):1617-26.

Bao G.  2014.  Nanomedicine: Tiny Particles & Machines Give Huge Gains. Annals of Biomedical Engineering. :243-59.

Rajshekhar G, Bhaduri B., Edwards C, Goddard L, Popescu G.  2014.  Nanoscale topography and spatial light modulator characterization using wide-field quantitative phase imaging.. Opt Express. 22(3):3432-8.

Popescu G, Park K, Mir M, Bashir R.  2014.  New technologies for measuring single cell mass.. Lab Chip. 14(4):646-52.

Yu P, Lu Y, Jordan BJ, Liu Y, Yang J-Y, Hutcheson JM, Ethridge CL, Mumaw JL, Kinder HA, Beckstead RB et al..  2014.  Nonviral minicircle generation of induced pluripotent stem cells compatible with production of chimeric chickens.. Cell Reprogram. 16(5):366-78.

Tang X, Tofangchi A, Anand SV, Saif T.  2014.  A Novel Cell Traction Force Microscopy to Study Multi-cellular System. PLOS Computational Biology. 10(6)

Bhaduri B, Kandel M, Brugnara C, Tangella K, Popescu G.  2014.  Optical assay of erythrocyte function in banked blood.. Sci Rep. 4:6211.

Adams DSpencer, Lemire JM, Kramer RH, Levin M.  2014.  Optogenetics in Developmental Biology: using light to control ion flux-dependent signals in Xenopus embryos. The International Journal of Developmental Biology. 58(10-11-12):851-861.

Adams DSpencer, Lemire JM, Kramer RH, Levin M.  2014.  Optogenetics in Developmental Biology: using light to control ion flux-dependent signals in Xenopus embryos.. Int J Dev Biol. 58(10-12):851-61.

Byrne MB, Kimura Y, Kapoor A, He Y, Mattam KS, Hasan KM, Olson LN, Wang F, Kenis PJA, Rao CV.  2014.  Oscillatory behavior of neutrophils under opposing chemoattractant gradients supports a winner-take-all mechanism.. PLoS One. 9(1):e85726.

Ochs CJ, Kasuya J, Pavesi A, Kamm RD.  2014.  Oxygen levels in thermoplastic microfluidic devices during cell culture. Lab on a Chip. 14(3):459-462.

García AJ.  2014.  PEG-maleimide hydrogels for protein and cell delivery in regenerative medicine.. Ann Biomed Eng. 42(2):312-22.

Duportet X, Wroblewska L, Guye P, Li Y, Eyquen J, Riders J, Tharathorn R, Batt regory, Weiss R.  2014.  A platform for rapid prototyping of synthetic gene networks in mammalian cells..

Thornton SR, Butty VL, Levine SS, Boyer LA.  2014.  Polycomb Repressive Complex 2 regulates lineage fidelity during embryonic stem cell differentiation.. PLoS One. 9(10):e110498.

Herath S., Yue D., Hui S., Kim M.C., Wang D., Wang Q., Van Vliet K.J., H Asada H, Chen P..  2014.  Quantification of Magnetically Induced Changes in ECM Local Apparent Stiffness. Biophysical Journal. 106(1):341.

Rahim NAida Abdul, Pelet S, Mofrad MRK, So PTC, Kamm RD.  2014.  Quantifying intracellular protein binding thermodynamics during mechanotransduction based on FRET spectroscopy.. Methods. 66(2):208-21.

Kim T., Popescu G.  2014.  Quantitative phase imaging of cells in 2-, 3- and 4-D. Optics & Photonics News. 12(34)

Kim T, Zhou R..  2014.  Quantitative Phase Imaging (QPI): Metrology Meets Biology. Photonics Journal, IEEE. PP(99)

Nguyen TH.  2014.  Quantitative phase imaging with partially coherent illumination. Optics Letter.

Busskamp V, Lewis NE, Guye P, Ng AHM, Shipman SL, Byrne SM, Sanjana NE, Murn J, Li Y, Li S et al..  2014.  Rapid neurogenesis through transcriptional activation in human stem cells.. Mol Syst Biol. 10:760.

Church GM, Elowitz MB, Smolke CD, Voigt CA, Weiss R.  2014.  Realizing the potential of synthetic biology.. Nat Rev Mol Cell Biol. 15(4):289-94.

L JCMVega, Lee MKyung, Jeong JHyun, Smith CE, Lee KYoung, Chung HJung, Leckband DE, Kong H.  2014.  Recapitulating cell-cell adhesion using N-cadherin biologically tethered to substrates.. Biomacromolecules. 15(6):2172-9.

E W, R S, Stice SL.  2014.  The Role of Notch Signaling in Astrocyte and Oligodendrocyte Derivation. UGA Center for Undergraduate Research Opportunities Conference. :P.140.

Williams BJ, Anand SV, Rajagopalan J, Saif T.  2014.  A self-propelled biohybrid swimmer at low Reynolds number. Nat Commun. 5

Gannavarpu R, Bhaduri B, Tangella K, Popescu G.  2014.  Spatiotemporal Characterization of a Fibrin Clot Using Quantitative Phase Imaging. PLoS ONE. 9(11):e111381.

Glaser DE, Burns A., Hatano R., Medrzycki M, Fan Y, McCloskey KE.  2014.  Specialized Mouse Embryonic Stem Cells for Studying Vascular Development. Stem Cells Cloning . :79-88.

Nerem RM.  2014.  Stem Cell Engineering. Tissue Engineering, Part A. 20(5-6):893-894.

Stanton BC, Siciliano V, Ghodasara A, Wroblewska L, Clancy K, Trefzer AC, Chesnut JD, Weiss R, Voigt CA.  2014.  Systematic transfer of prokaryotic sensors and circuits to mammalian cells.. ACS Synth Biol. 3(12):880-91.

Cvetkovic C, Raman R, Chan V, Williams BJ, Tolish M, Bajaj P, Sakar MSelman, H Asada H, M Saif TA, Bashir R.  2014.  Three-dimensionally printed biological machines powered by skeletal muscle.. Proc Natl Acad Sci U S A. 111(28):10125-30.

Cvetkovic C, Raman R., Chan V, Williams B.J, Tolish M., Bajaj P., Sakar M.S, H Asada H, Saif T, Bashir R.  2014.  Three-dimensionally printed biological machines powered by skeletal muscle. Proceedings of the National Academy of Sciences. 111(28):10125-10130.

Cvetkovic C, Raman R, Chan V, Williams BJ, Tolish M, Bajaj P, Sakar MSelman, H Asada H, Saif T, Bashir R.  2014.  Three-dimensionally printed biological machines powered by skeletal muscle.. 111(28):10125-30.

Borau C, Kamm RD, García-Aznar JManuel.  2014.  A time-dependent phenomenological model for cell mechano-sensing.. Biomech Model Mechanobiol. 13(2):451-62.

Turner WS, Sandhu N, McCloskey KE.  2014.  Tissue Engineering: Construction of a Multicellular 3D Scaffold for the Delivery of Layered Cell Sheets. Journal of Visualized Experiments. (92)

Froeter P, Huang Y, Cangellaris OV, Huang W, Dent EW, Gillette M.U., Williams JC, Li X.  2014.  Toward Intelligent Synthetic Neural Circuits: Directing and Accelerating Neuron Cell Growth by Self-Rolled-Up Silicon Nitride Microtube Array. ACS Nano. 8(11):11108-11117.

Bao G, Bazilevs Y, Chung J-H, Decuzzi P, Espinosa HD, Ferrari M, Gao H, Hossain SS, Hughes TJR, Kamm RD et al..  2014.  USNCTAM perspectives on mechanics in medicine.. J R Soc Interface. 11(97):20140301.

Chan V, H Asada H, Bashir R.  2014.  Utilization and control of bioactuators across multiple length scales.. Lab Chip. 14(4):653-70.

Chan V, H Asada H, Bashir R.  2014.  Utilization and control of bioactuators across multiple length scales. Lab Chip. 14(4):653-670.

Niu Y, Bai J, Kamm RD, Wang Y, Wang C.  2014.  Validating antimetastatic effects of natural products in an engineered microfluidic platform mimicking tumor microenvironment.. Mol Pharm. 11(7):2022-9.

Fletcher AG, Osterfield M, Baker RE, Shvartsman SY.  2014.  Vertex models of epithelial morphogenesis.. Biophys J. 106(11):2291-304.

Kim T, Zhou R., Mir M, S Babacan D, Carney P.S, Goddard L, Popescu G.  2014.  White-light diffraction tomography of unlabeled live cells. Nature Photonics. 8

Kothapalli CR, Kamm RD.  2013.  3D matrix microenvironment for targeted differentiation of embryonic stem cells into neural and glial lineages.. Biomaterials. 34(25):5995-6007.

Singh A, Suri S, Lee T, Chilton JM, Cooke MT, Chen W, Fu J, Stice SL, Lu H, McDevitt TC et al..  2013.  Adhesion strength-based, label-free isolation of human pluripotent stem cells.. Nat Methods. 10(5):438-44.

Liu Q, Zhang F, Zhang D, Hu N, Wang H, K Hsia J, Wang P.  2013.  Bioelectronic tongue of taste buds on microelectrode array for salt sensing.. Biosens Bioelectron. 40(1):115-20.

Klattenhoff CA, Scheuermann JC, Surface LE, Bradley RK, Fields PA, Steinhauser ML, Ding H, Butty VL, Torrey L, Haas S et al..  2013.  Braveheart, a long noncoding RNA required for cardiovascular lineage commitment.. Cell. 152(3):570-83.

De Souza EJ, Ahmed WW, Chan V, Bashir R, Saif T.  2013.  Cardiac myocytes' dynamic contractile behavior differs depending on heart segment. Biotechnol Bioeng. 110(2):628-36.

Bhaduri B, Wickland D, Wang R, Chan V, Bashir R, Popescu G.  2013.  Cardiomyocyte imaging using real-time spatial light interference microscopy (SLIM).. PLoS One. 8(2):e56930.

Kim W-S, Lee S, Yoon Y-S.  2013.  Cardiovascular repair with bone marrow-derived cells.. Blood Res. 48(2):76-86.

Han JWoong, Sin MYoung.  2013.  Cell therapy for diabetic neuropathy using adult stem or progenitor cells.. Diabetes Metab J. 37(2):91-105.

Lim SHien, Kim C, Aref AR, Kamm RD, Raghunath M.  2013.  Complementary effects of ciclopirox olamine, a prolyl hydroxylase inhibitor and sphingosine 1-phosphate on fibroblasts and endothelial cells in driving capillary sprouting. Integr Biol. 5(12):1474-84.

Majeed H, Shaheen A, Anwar MSabieh.  2013.  Complete Stokes polarimetry of magneto-optical Faraday effect in a terbium gallium garnet crystal at cryogenic temperatures. Optics Express. 21(21):25148.

Liu Y, Teoh S-H, Chong MSK, Yeow C-H, Kamm RD, Choolani M, K Y Chan J.  2013.  Contrasting effects of vasculogenic induction upon biaxial bioreactor stimulation of mesenchymal stem cells and endothelial progenitor cells cocultures in three-dimensional scaffolds under in vitro and in vivo paradigms for vascularized bone tissue engine. Tissue Eng Part A. 19(7-8):893-904.

Joaquin D., Grigola M, Nardulli K.A., K. Hsia J.  2013.  Controlling Cell Morphology in Three-Dimensional in vitro Culture with Mechanical Environmental Cues.

Rowlands CJ, So PTC.  2013.  On the correction of errors in some multiple particle tracking experiments.. Appl Phys Lett. 102(2):21913.

Kim T, Zhu R, Nguyen TH, Edwards C, Goddard L, Popescu G.  2013.  Deterministic signal associated with a random field.. Opt Express. 21(18):20806-20.

Popova EY, Grigoryev SA, Fan Y, Skoultchi AI, Zhang SS, Barnstable CJ.  2013.  Developmentally regulated linker histone H1c promotes heterochromatin condensation and mediates structural integrity of rod photoreceptors in mouse retina.. J Biol Chem. 288(24):17895-907.

Seong J, Tajik A, Sun J, Guan J-L, Humphries MJ, Craig SE, Shekaran A, García AJ, Lu S, Lin MZ et al..  2013.  Distinct biophysical mechanisms of focal adhesion kinase mechanoactivation by different extracellular matrix proteins.. Proc Natl Acad Sci U S A. 110(48):19372-7.

Kim M-C, Neal DM, Kamm RD, H Asada H.  2013.  Dynamic modeling of cell migration and spreading behaviors on fibronectin coated planar substrates and micropatterned geometries.. PLoS Comput Biol. 9(2):e1002926.

Poole J, Mavromatis K, Binongo JN, Khan A, Li Q, Khayata M, Rocco E, Topel M, Zhang X, Brown C et al..  2013.  Effect of progenitor cell mobilization with granulocyte-macrophage colony-stimulating factor in patients with peripheral artery disease: a randomized clinical trial.. JAMA. 310(24):2631-9.

Kinney MA, McDevitt TC.  2013.  Emerging strategies for spatiotemporal control of stem cell fate and morphogenesis.. Trends Biotechnol. 31(2):78-84.

Chan V, Raman R, Cvetkovic C, Bashir R.  2013.  Enabling microscale and nanoscale approaches for bioengineered cardiac tissue.. ACS Nano. 7(3):1830-7.

Hatano R, Mercurio K, Luna JIsaac, Glaser DE, Leppert VJ, McCloskey KE.  2013.  Endothelial cells derived from embryonic stem cells respond to cues from topographical surface patterns.. J Biol Eng. 7:18.

Neal D, H Asada H.  2013.  Engineered muscle systems having individually addressable distributed muscle actuators controlled by optical stimuli.. Conf Proc IEEE Eng Med Biol Soc. 2013:326-9.

Cheng AY, García AJ.  2013.  Engineering the matrix microenvironment for cell delivery and engraftment for tissue repair.. Curr Opin Biotechnol. 24(5):864-71.

Andukuri A, Sohn Y-D, Anakwenze CP, Lim D-J, Brott BC, Yoon Y-S, Jun H-W.  2013.  Enhanced human endothelial progenitor cell adhesion and differentiation by a bioinspired multifunctional nanomatrix.. Tissue Eng Part C Methods. 19(5):375-85.

DeVolder RJ, Antoniadou E, Kong H.  2013.  Enzymatically cross-linked injectable alginate-g-pyrrole hydrogels for neovascularization. J Control Release. 172(1)

Krishnamoorthy M, Gerwe BA, Scharer CD, Sahasranaman V, Eilertson CD, Nash RJ, Usta SNaz, Kelly S, Rose M, Peraza R et al..  2013.  Ethanol alters proliferation and differentiation of normal and chromosomally abnormal human embryonic stem cell-derived neurospheres.. Birth Defects Res B Dev Reprod Toxicol. 98(3):283-95.

Rajagopalan J, Saif T.  2013.  Fabrication of Freestanding 1-D PDMS Microstructures Using Capillary Micromolding. J of MEMS. 22(5)

Clay N, Baek K, Shkumatov A, Lai M-H, Smith CE, Rich M, Kong H.  2013.  Flow-mediated stem cell labeling with superparamagnetic iron oxide nanoparticle clusters.. ACS Appl Mater Interfaces. 5(20):10266-73.

Bhaduri B., Tangella K, Popescu G.  2013.  Fourier phase microscopy with white light.. Biomed Opt Express. 4(8):1434-41.

Li Y, Drnevich J, Akraiko T, Band M, Li D, Wang F, Matoba R, Tanaka TS.  2013.  Gene expression profiling reveals the heterogeneous transcriptional activity of Oct3/4 and its possible interaction with Gli2 in mouse embryonic stem cells.. Genomics. 102(5-6):456-67.

Liang Y, Kong H.  2013.  Generation of cell-instructive collagen gels through thermodynamic control. ACS Macro Letters. 2(12)

Gupta S, Bram EE, Weiss R.  2013.  Genetically programmable pathogen sense and destroy.. ACS Synth Biol. 2(12):715-23.

Scheuermann JC, Boyer LA.  2013.  Getting to the heart of the matter: long non-coding RNAs in cardiac development and disease.. EMBO J. 32(13):1805-16.

Kim T, Sridharan S, Kajdacsy-Balla A, Tangella K, Popescu G.  2013.  Gradient field microscopy for label-free diagnosis of human biopsies [Invited].. Appl Opt. 52(1):A92-6.

[Anonymous].  2013.  Griffiths, S., Baraniak, P.R., Copland, I.B., Nerem, R.M., and McDevitt, T.C., “Human Platelet Lysate Stimulates High Passage and Senescent Human Multipotent Mesenchymal Stromal Cell Growth and Rejuvenation In Vitro,” Cytotherapy, 15(12): 1469-1483, 2.

Subramanian V, Mazumder A, Surface LE, Butty VL, Fields PA, Alwan A, Torrey L, Thai KK, Levine SS, Bathe M et al..  2013.  H2A.Z acidic patch couples chromatin dynamics to regulation of gene expression programs during ESC differentiation.. PLoS Genet. 9(8):e1003725.

Crecea V..  2013.  High Resolution Phase-Sensitive Magnetomotive Optical Coherence Microscopy for Tracking Magnetic Microbeads and Cellular Mechanics . Selected Topics in Quantum Electronics, IEEE Journal of. 20(2)

Cao K, Lailler N, Zhang Y, Kumar A, Uppal K, Liu Z, Lee EK, Wu H, Medrzycki M, Pan C et al..  2013.  High-resolution mapping of h1 linker histone variants in embryonic stem cells.. PLoS Genet. 9(4):e1003417.

Griffiths S, Baraniak PR, Copland IB, Nerem RM, McDevitt TC.  2013.  Human platelet lysate stimulates high-passage and senescent human multipotent mesenchymal stromal cell growth and rejuvenation in vitro.. Cytotherapy. 15(12):1469-83.

Baek K, Jeong JHyun, Shkumatov A, Bashir R, Kong H.  2013.  In situ self-folding assembly of a multi-walled hydrogel tube for uniaxial sustained molecular release.. Adv Mater. 25(39):5568-73.

Sohn Y-D, Somasuntharam I, Che P-lin, Jayswal R, Murthy N, Davis ME, Yoon Y-S.  2013.  Induction of pluripotency in bone marrow mononuclear cells via polyketal nanoparticle-mediated delivery of mature microRNAs.. Biomaterials. 34(17):4235-41.

Hong M, Jo H, Ankeny RF, Holliday-Ankeny CJ, Kim H, Khang G, Nerem RM.  2013.  Influence of mesenchymal stem cells on the response of endothelial cells to laminar flow and shear stress.. Cells Tissues Organs. 198(4):289-99.

Majumder A, Dhara SK, Swetenburg R, Mithani M, Cao K, Medrzycki M, Fan Y, Stice SL.  2013.  Inhibition of DNA methyltransferases and histone deacetylases induces astrocytic differentiation of neural progenitors.. Stem Cell Res. 11(1):574-86.

Adams D.S, Tseng A.-S., Levin M.  2013.  Light-activation of the Archaerhodopsin H+-pump reverses age-dependent loss of vertebrate regeneration: sparking system-level controls in vivo. Biology Open. 2(3):306-313.

He Y, Li D, Cook SL, Yoon M-S, Kapoor A, Rao CV, Kenis PJA, Chen J, Wang F.  2013.  Mammalian target of rapamycin and Rictor control neutrophil chemotaxis by regulating Rac/Cdc42 activity and the actin cytoskeleton.. Mol Biol Cell. 24(21):3369-80.

Ahmed WW, Williams BJ, Silver AM, Saif T.  2013.  Measuring nonequilibrium vesicle dynamics in neurons under tension. Lab Chip. 13(4):570-8.

Chen MB, Whisler JA, Jeon JS, Kamm RD.  2013.  Mechanisms of tumor cell extravasation in an in vitro microvascular network platform.. Integr Biol (Camb). 5(10):1262-71.

Li W, Lee S, Ma M, Kim SMin, Guye P, Pancoast JR, Anderson DG, Weiss R, Lee RT, Hammond PT.  2013.  Microbead-based biomimetic synthetic neighbors enhance survival and function of rat pancreatic β-cells.. Sci Rep. 3:2863.

Suri S, Singh A, Nguyen AH, Bratt-Leal AM, McDevitt TC, Lu H.  2013.  Microfluidic patterning of embryonic multicellular aggregates for in vitro development studies.. Lab on a Chip. 13(23)):4617-4624.

Polacheck WJ, Li R, Uzel SGM, Kamm RD.  2013.  Microfluidic platforms for mechanobiology.. Lab Chip. 13(12):2252-67.

Kniss A, Lu H, Jones DP, Kemp ML.  2013.  A microfluidic systems biology approach for live single-cell mitochondrial ROS imaging.. Methods Enzymol. 526:219-30.

Corbin EA, Millet LJ, Pikul JH, Johnson CL, Georgiadis JG, King WP, Bashir R.  2013.  Micromechanical properties of hydrogels measured with MEMS resonant sensors.. Biomed Microdevices. 15(2):311-9.

Bratt-Leal AM, Nguyen A, Hammersmith KA, Singh A, McDevitt TC.  2013.  A microparticle approach to morphogen delivery within pluripotent stem cell aggregates.. Biomaterials. 34(30)):7227-7235.

Bao G, Mitragotri S, Tong S.  2013.  Multifunctional nanoparticles for drug delivery and molecular imaging.. Annu Rev Biomed Eng. 15:253-82.

Wang R, Kim T, Mir M, Popescu G.  2013.  Nanoscale fluctuations and surface tension measurements in droplets using phase-resolved low-coherence interferometry.. Appl Opt. 52(1):A177-81.

Ouyang M, Lu S, Kim T, Chen C-E, Seong J, Leckband DE, Wang F, Reynolds AB, Schwartz MA, Wang Y.  2013.  N-cadherin regulates spatially polarized signals through distinct p120ctn and β-catenin-dependent signalling pathways.. Nat Commun. 4:1589.

Espinosa HD, Bao G, Ahmed WW, Rajagopalan J, Tofangchi A, Saif T.  2013.  Neuromechanics: The Role of Tension in Neuronal Growth and Memory. Nano and Cell Mechanics. :35–61.

Guo X, Stice SL, Boyd NL, Chen S-Y.  2013.  A novel in vitro model system for smooth muscle differentiation from human embryonic stem cell-derived mesenchymal cells.. Am J Physiol Cell Physiol. 304(4):C289-98.

Neal D, Sakar MSelman, H Asada H.  2013.  Optogenetic control of live skeletal muscles: Non-invasive, wireless, and precise activation of muscle tissues. American Control Conference (ACC).

Bajaj P, Marchwiany D, Duarte C, Bashir R.  2013.  Patterned three-dimensional encapsulation of embryonic stem cells using dielectrophoresis and stereolithography.. Adv Healthc Mater. 2(3):450-8.

Ban K, Wile B, Kim S, Park H-J, Byun J, Cho K-W, Saafir T, Song M-K, Yu SPing, Wagner M et al..  2013.  Purification of cardiomyocytes from differentiating pluripotent stem cells using molecular beacons that target cardiomyocyte-specific mRNA.. Circulation. 128(17):1897-909.

Lee JEun, Zamdborg L, Southey BR, Atkins N, Mitchell JW, Li M, Gillette MU, Kelleher NL, Sweedler JV.  2013.  Quantitative peptidomics for discovery of circadian-related peptides from the rat suprachiasmatic nucleus.. J Proteome Res. 12(2):585-93.

Guye P, Li Y, Wroblewska L, Duportet X, Weiss R.  2013.  Rapid, modular and reliable construction of complex mammalian gene circuits.. Nucleic Acids Res. 41(16):e156.

Levin M.  2013.  Reprogramming cells and tissue patterning via bioelectrical pathways: molecular mechanisms and biomedical opportunities.. Wiley Interdiscip Rev Syst Biol Med. 5(6):657-76.

Lee S, Yoon Y-S.  2013.  Revisiting cardiovascular regeneration with bone marrow-derived angiogenic and vasculogenic cells.. Br J Pharmacol. 169(2):290-303.

Mazzoni EO, Mahony S, Peljto M, Patel T, Thornton SR, McCuine S, Reeder C, Boyer LA, Young RA, Gifford DK et al..  2013.  Saltatory remodeling of Hox chromatin in response to rostrocaudal patterning signals.. Nat Neurosci. 16(9):1191-8.

Lodato MA, Ng CW, Wamstad JA, Cheng AW, Thai KK, Fraenkel E, Jaenisch R, Boyer LA.  2013.  SOX2 co-occupies distal enhancer elements with distinct POU factors in ESCs and NPCs to specify cell state.. PLoS Genet. 9(2):e1003288.

Nguyen TH, Popescu G.  2013.  Spatial Light Interference Microscopy (SLIM) using twisted-nematic liquid-crystal modulation.. Biomed Opt Express. 4(9):1571-83.

White DE, Kinney MA, McDevitt TC, Kemp ML.  2013.  Spatial pattern dynamics of 3D stem cell loss of pluripotency via rules-based computational modeling.. PLoS Comput Biol. 9(3):e1002952.

Yonet-Tanyeri N, Rich MH, Lee M, Lai M-H, Jeong JHyun, DeVolder RJ, Kong H.  2013.  The spatiotemporal control of erosion and molecular release from micropatterned poly(ethylene glycol)-based hydrogel.. Biomaterials. 34(33):8416-23.

Blancas AA, Wong LE, Glaser DE, McCloskey KE.  2013.  Specialized tip/stalk-like and phalanx-like endothelial cells from embryonic stem cells.. Stem Cells Dev. 22(9):1398-407.

Yang J-Y, Mumaw JL, Liu Y, Stice SL, West FD.  2013.  SSEA4-positive pig induced pluripotent stem cells are primed for differentiation into neural cells.. Cell Transplant. 22(6):945-59.

Jeong JHyun, Liang Y, Jang M, Cha C, Chu C, Lee H, Jung W, Kim JWoong, Boppart SA, Kong H.  2013.  Stiffness-modulated water retention and neovascularization of dermal fibroblast-encapsulating collagen gel.. Tissue Eng Part A. 19(11-12):1275-84.

Huang C, Butler PJ, Tong S, Muddana HS, Bao G, Zhang S.  2013.  Substrate stiffness regulates cellular uptake of nanoparticles.. Nano Lett. 13(4):1611-5.

Wang T, Wu H, Li Y, Szulwach KE, Lin L, Li X, Chen I-P, Goldlust IS, Chamberlain SJ, Dodd A et al..  2013.  Subtelomeric hotspots of aberrant 5-hydroxymethylcytosine-mediated epigenetic modifications during reprogramming to pluripotency.. Nat Cell Biol. 15(6):700-11.

Cha C, Antoniadou E, Lee M, Jeong JHyun, Ahmed WW, Saif TA, Boppart SA, Kong H.  2013.  Tailoring hydrogel adhesion to polydimethylsiloxane substrates using polysaccharide glue.. Angew Chem Int Ed Engl. 52(27):6949-52.

Schmidt JJ, Jeong JHyun, Chan V, Cha C, Baek K, Lai M-H, Bashir R, Kong H.  2013.  Tailoring the dependency between rigidity and water uptake of a microfabricated hydrogel with the conformational rigidity of a polymer cross-linker.. Biomacromolecules. 14(5):1361-9.

Kinney MA, Sargent CY, McDevitt TC.  2013.  Temporal modulation of β-catenin signaling by multicellular aggregation kinetics impacts embryonic stem cell cardiomyogenesis.. Stem Cells Dev. 22(19):2665-77.

Hang T-C, Tedford NC, Reddy RJ, Rimchala T, Wells A, White FM, Kamm RD, Lauffenburger DA.  2013.  Vascular endothelial growth factor (VEGF) and platelet (PF-4) factor 4 inputs modulate human microvascular endothelial signaling in a three-dimensional matrix migration context.. Mol Cell Proteomics. 12(12):3704-18.

Liu Y, Yang JYeh, Lu Y, Yu P, C Dove R, Hutcheson JM, Mumaw JL, Stice SL, West FD.  2013.  α-1,3-Galactosyltransferase knockout pig induced pluripotent stem cells: a cell source for the production of xenotransplant pigs.. Cell Reprogram. 15(2):107-16.

Sa S, McCloskey KE.  2012.  Activin A and BMP4 Signaling for Efficient Cardiac Differentiation of H7 and H9 Human Embryonic Stem Cells.. J Stem Cells Regen Med. 8(3):198-202.

Zhou J, Li D, Wang F.  2012.  Assessing the function of mTOR in human embryonic stem cells. Methods Mol Biol. 821:361-72.

Neal D, Sakar MSelman, H Asada H.  2012.  Bioengineered Fascicle-Like Skeletal Muscle Tissue Constructs. 2012 ASME Summer Bioengineering Conference.

Barry ZT, Platt MO.  2012.  Cathepsin S cannibalism of cathepsin K as a mechanism to reduce type I collagen degradation. J Biol Chem. 287(33):27723-30.

Mir M, Bhaduri B., Wang R, Zhu R, Popescu G.  2012.  Chapter 3 - Quantitative Phase Imaging. Progress in Optics. 57:133-217.

Millet LJ, Corbin EA, Free R, Park K, Kong H, King WP, Bashir R.  2012.  Characterization of mass and swelling of hydrogel microstructures using MEMS resonant mass sensor arrays.. Small. 8(16):2555-62.

Huang X.U., Zhang S.L.  2012.  Chemomechanics Control of Tearing Paths in Graphene. Physical Review B. 85(19):195453:1-6.

Moon S-H, Ban K, Kim C, Kim S-S, Byun J, Song M-K, Park I-H, Yu SPing.  2012.  Development of a novel two-dimensional directed differentiation system for generation of cardiomyocytes from human pluripotent stem cells. Int J Cardiol.

Chan V, Park K, Collens MB, Kong H, Saif T, Bashir R.  2012.  Development of Miniaturized Walking Biological Machines. Sci. Rep.. 2

Chan V, Collens MB, Jeong JHyun, Park K, Kong H, Bashir R.  2012.  Directed cell growth and alignment on protein-patterned 3D hydrogels with stereolithography. Virtual and Physical Prototyping. 7(3):219-228.

Salimath AS, Phelps EA, Boopathy AV, Che P-lin, Brown M, García AJ, Davis ME.  2012.  Dual delivery of hepatocyte and vascular endothelial growth factors via a protease-degradable hydrogel improves cardiac function in rats.. PLoS One. 7(11):e50980.

Wamstad JA, Alexander JM, Truty RM, Shrikumar A, Li F, Eilertson KE, Ding H, Wylie JN, Pico AR, Capra JA et al..  2012.  Dynamic and coordinated epigenetic regulation of developmental transitions in the cardiac lineage.. Cell. 151(1):206-20.

Kim H, Kim JJ, Yoon Y-S.  2012.  Emerging therapy for diabetic neuropathy: cell therapy targeting vessels and nerves.. Endocr Metab Immune Disord Drug Targets. 12(2):168-78.

Farahat WA, Wood LB, Zervantonakis IK, Schor A, Ong S, Neal D, Kamm RD, H Asada H.  2012.  Ensemble analysis of angiogenic growth in three-dimensional microfluidic cell cultures. PLoS One. 7(5):e37333.

Han JWoong.  2012.  Epigenetic landscape of pluripotent stem cells. Antioxid Redox Signal. 17(2):205-23.

Medrzycki M, Zhang Y, Cao K, Fan Y.  2012.  Expression analysis of mammalian linker-histone subtypes.. J Vis Exp. (61)

Sakar MSelman, Neal D, Boudou T, Borochin MA, Li Y, Weiss R, Kamm RD, Chen CS, H Asada H.  2012.  Formation and optogenetic control of engineered 3D skeletal muscle bioactuators.. Lab Chip. 12(23):4976-85.

Slusarczyk AL, Lin A, Weiss R.  2012.  Foundations for the design and implementation of synthetic genetic circuits. Nat Rev Genet. 13(6):406-20.

Sohn Y-D, Han JWoong.  2012.  Generation of induced pluripotent stem cells from somatic cells.. Prog Mol Biol Transl Sci. 111:1-26.

Oelker AM, Morey SM, Griffiths S, Hammond PT.  2012.  Helix versus coil polypeptide macromers: gel networks with decoupled stiffness and permeability. Soft Matter. 8(42):10887-10895.

Zhang Y, Cooke M, Panjwani S, Cao K, Krauth B, Ho P-Y, Medrzycki M, Berhe DT, Pan C, McDevitt TC et al..  2012.  Histone h1 depletion impairs embryonic stem cell differentiation. PLoS Genet. 8(5):e1002691.

Park K, Shim J, Solovyeva V, Corbin EA, Banerjee S, Bashir R.  2012.  Hydrodynamic loading and viscous damping of patterned perforations on microfabricated resonant structures. Appl Phys Lett. 100(15):154107-5.

Fridley KM, Kinney MA, McDevitt TC.  2012.  Hydrodynamic modulation of pluripotent stem cells.. Stem Cell Res Ther. 3(6):45.

Li D, Yang H, Nan H, Liu P, Pang S, Zhao Q, Karni R, Kamps MP, Xu Y, Zhou J et al..  2012.  Identification of key regulatory pathways of myeloid differentiation using an mESC-based karyotypically normal cell model.. Blood. 120(24):4712-9.

Singh VRaj, Choi H, Yew EYS, Bhattacharya D, Yuan L, Sheppard CJR, Rajapakse JC, Barbastathis G, So PTC.  2012.  Improving signal-to-noise ratio of structured light microscopy based on photon reassignment. Biomed Opt Express. 3(1):206-14.

Kim C, Chung S, Yuchun L, Kim M-C, K Y Chan J, H Asada H, Kamm RD.  2012.  In vitro angiogenesis assay for the study of cell-encapsulation therapy.. Lab Chip. 12(16):2942-50.

Zhao Y, Graf BW, Chaney EJ, Mahmassani Z, Antoniadou E, Devolder R, Kong H, Boppart MD, Boppart SA.  2012.  Integrated multimodal optical microscopy for structural and functional imaging of engineered and natural skin.. J Biophotonics. 5(5-6):437-48.

Kim M-C, Kim C, Wood LB, Neal D, Kamm RD, H Asada H.  2012.  Integrating focal adhesion dynamics, cytoskeleton remodeling, and actin motor activity for predicting cell migration on 3D curved surfaces of the extracellular matrix. Integr Biol (Camb). 4(11):1386-97.

Chu C, Kong H.  2012.  Interplay of cell adhesion matrix stiffness and cell type for non-viral gene delivery.. Acta Biomater. 8(7):2612-9.

Jeong JHyun, Chan V, Cha C, Zorlutuna P, Dyck C., K. Hsia J, Bashir R, Kong H.  2012.  "Living" microvascular stamp for patterning of functional neovessels; orchestrated control of matrix property and geometry. Adv Mater. 24(1):58-63,1.

Phelps EA, Enemchukwu NO, Fiore VF, Sy JC, Murthy N, Sulchek TA, Barker TH, García AJ.  2012.  Maleimide cross-linked bioactive PEG hydrogel exhibits improved reaction kinetics and cross-linking for cell encapsulation and in situ delivery. Adv Mater. 24(1):64-70,2.

Ahmed WW, Li TC, Rubakhin SS, Chiba A, Sweedler JV, Saif T.  2012.  Mechanical tension modulates local and global vesicle dynamics in neurons.. Cell Mol Bioeng. 5(2):155-164.

Vickerman V, Kamm RD.  2012.  Mechanism of a flow-gated angiogenesis switch: early signaling events at cell-matrix and cell-cell junctions. Integr Biol (Camb). 4(8):863-74.

Liu Q.J., Wang P.  2012.  Microelectrode Recording of Tissue Neural Oscillations for a Bionic Olfactory Biosensor. Journal of Bionic Engineering. 9(4)

DeVolder RJ, Zill AT, Jeong JH, Kong H.  2012.  Microfabrication of proangiogenic cell-laden alginate-g-pyrrole hydrogels.. Biomaterials. 33(31):7718-26.

Shin Y, Han S, Jeon JS, Yamamoto K, Zervantonakis IK, Sudo R, Kamm RD, Chung S.  2012.  Microfluidic assay for simultaneous culture of multiple cell types on surfaces or within hydrogels. Nat Protoc. 7(7):1247-59.

Wong KHK, Chan JM, Kamm RD, Tien J.  2012.  Microfluidic models of vascular functions. Annu Rev Biomed Eng. 14:205-30.

Chan V, Jeong JHyun, Bajaj P, Collens MB, Saif T, Kong H, Bashir R.  2012.  Multi-material bio-fabrication of hydrogel cantilevers and actuators with stereolithography. Lab Chip. 12(1):88-98.

Wood LB, Ge R, Kamm RD, H Asada H.  2012.  Nascent vessel elongation rate is inversely related to diameter in in vitro angiogenesis. Integr Biol (Camb). 4(9):1081-9.

Majumder A, Banerjee S, Harrill JA, Machacek DW, Mohamad O, Bacanamwo M, Mundy WR, Wei L, Dhara SK, Stice SL.  2012.  Neurotrophic effects of leukemia inhibitory factor on neural cells derived from human embryonic stem cells.. Stem Cells. 30(11):2387-99.

Millet LJ, Gillette M.U..  2012.  New perspectives on neuronal development via microfluidic environments. Trends Neurosci. 35(12):752-61.

Tang X, M Ali Y, Saif T.  2012.  A Novel Technique for Micro-patterning Proteins and Cells on Polyacrylamide Gels. Soft Matter. 8(27):7197-7206.

Liu Q.J., K. Hsia J, Wang P.  2012.  Olfactory Epithelium Biosensor: Odor Discrimination of Receptor Neurons from a Bio-hybrid Sensing System. Biomedical Microdevices. 14(6):6.

Millet LJ, Gillette M.U..  2012.  Over a century of neuron culture: from the hanging drop to microfluidic devices. Yale J Biol Med. 85(4):501-21.

Medrzycki M, Zhang Y, McDonald JF, Fan Y.  2012.  Profiling of linker histone variants in ovarian cancer.. Front Biosci (Landmark Ed). 17:396-406.

Dennis AM, Rhee WJong, Sotto D, Dublin SN, Bao G.  2012.  Quantum dot-fluorescent protein FRET probes for sensing intracellular pH. ACS Nano. 6(4):2917-24.

Zhang Y, Liu Z, Medrzycki M, Cao K, Fan Y.  2012.  Reduction of Hox gene expression by histone H1 depletion.. PLoS One. 7(6):e38829.

Hochedlinger K., Takahashi K., Plath K., Ng H.H., Clark A., Martin U., Hanna J.H., Deng H., Silva J.C.R., Woltjen K. et al..  2012.  Reprogramming: The Next Generation. Cell Stem Cell.. 11(6)

Sa S, McCloskey KE.  2012.  Stage-specific cardiomyocyte differentiation method for H7 and H9 human embryonic stem cells.. Stem Cell Rev. 8(4):1120-8.

Kinney MA, Saeed R, McDevitt TC.  2012.  Systematic analysis of embryonic stem cell differentiation in hydrodynamic environments with controlled embryoid body size.. Integr Biol (Camb). 4(6):641-50.

Mayalu M.N., H Asada H.  2012.  A Time-Based Approach to Stochastic Modeling of Intracellular Signaling Events. Dynamic Systems and Control Conference (DSCC).

Slusarczyk AL, Weiss R.  2012.  Understanding signaling dynamics through synthesis.. Sci Signal. 5(220):pe16.

Liao X, Lu S, Zhuo Y, Winter C, Xu W, Wang Y.  2012.  Visualization of Src and FAK activity during the differentiation process from HMSCs to osteoblasts. PLoS One. 7(8):e42709.

Mir M, S Babacan D, Bednarz M, Do MN, Golding I, Popescu G.  2012.  Visualizing Escherichia coli sub-cellular structure using sparse deconvolution Spatial Light Interference Tomography.. PLoS One. 7(6):e39816.

Beal J, Lu T, Weiss R.  2011.  Automatic compilation from high-level biologically-oriented programming language to genetic regulatory networks. PLoS One. 6(8):e22490.

Mir M, Tangella K, Popescu G.  2011.  Blood testing at the single cell level using quantitative phase and amplitude microscopy.. Biomed Opt Express. 2(12):3259-66.

Nishitani WShin, Saif T, Wang Y.  2011.  Calcium signaling in live cells on elastic gels under mechanical vibration at subcellular levels. PLoS One. 6(10):e26181.

Liang Y, Jeong JHyun, DeVolder RJ, Cha C, Wang F, Tong YWah, Kong H.  2011.  A cell-instructive hydrogel to regulate malignancy of 3D tumor spheroids with matrix rigidity. Biomaterials. 32(35):9308-15.

Neal D, H Asada H.  2011.  Co-fabrication of live skeletal muscles as actuators in A millimeter scale mechanical system. 2011 IEEE International Conference on Robotics and Automation (ICRA).

Wan C-rei, Chung S, Kamm RD.  2011.  Differentiation of embryonic stem cells into cardiomyocytes in a compliant microfluidic system. Ann Biomed Eng. 39(6):1840-7.

Blancas AA, Shih AJ, Lauer NE, McCloskey KE.  2011.  Endothelial cells from embryonic stem cells in a chemically defined medium.. Stem Cells Dev. 20(12):2153-61.

Shin Y, Jeon JS, Han S, Jung G-S, Shin S, Lee S-H, Sudo R, Kamm RD, Chung S.  2011.  In vitro 3D collective sprouting angiogenesis under orchestrated ANG-1 and VEGF gradients. Lab Chip. 11(13):2175-81.

Han JWoong.  2011.  Induced pluripotent stem cells: emerging techniques for nuclear reprogramming. Antioxid Redox Signal. 15(7):1799-820.

Wang Z, Millet LJ, Chan V, Ding H, Gillette M.U., Bashir R, Popescu G.  2011.  Label-free intracellular transport measured by spatial light interference microscopy. J Biomed Opt. 16(2):026019.

Seong J, Lu S, Wang Y.  2011.  Live Cell Imaging of Src/FAK Signaling by FRET. Cell Mol Bioeng. 2(4):138-147.

Bratt-Leal AM, Kepple KL, Carpenedo RL, Cooke M, McDevitt TC.  2011.  Magnetic manipulation and spatial patterning of multi-cellular stem cell aggregates. Integr Biol (Camb). 3(12):1224-32.

H Asada H, Wang Y, Mayalu M.N..  2011.  Molecular signaling observer and predictor: A framework for closed-loop control of cell behaviors having long time delay. American Control Conference (ACC), 2011.

Luna JIsaac, Ciriza J, Garcia-Ojeda ME, Kong M, Herren A, Lieu DK, Li RA, Fowlkes CC, Khine M, McCloskey KE.  2011.  Multiscale biomimetic topography for the alignment of neonatal and embryonic stem cell-derived heart cells.. Tissue Eng Part C Methods. 17(5):579-88.

He Y, Kapoor A, Cook S, Liu S, Xiang Y, Rao CV, Kenis PJA, Wang F.  2011.  The non-receptor tyrosine kinase Lyn controls neutrophil adhesion by recruiting the CrkL-C3G complex and activating Rap1 at the leading edge. J Cell Sci. 124(Pt 13):2153-64.

Wang R, Wang Z, Leigh J, Sobh N, Millet LJ, Gillette M.U., Levine AJ, Popescu G.  2011.  One-dimensional deterministic transport in neurons measured by dispersion-relation phase spectroscopy. J Phys Condens Matter. 23(37):374107.

Mir M, Wang Z, Shen Z, Bednarz M, Bashir R, Golding I, Prasanth SG, Popescu G.  2011.  Optical measurement of cycle-dependent cell growth. Proc Natl Acad Sci U S A. 108(32):13124-9.

Millet LJ, Collens MB, Perry GLW, Bashir R.  2011.  Pattern analysis and spatial distribution of neurons in culture. Integr Biol (Camb). 3(12):1167-78.

Bajaj P, Reddy B, Millet LJ, Wei C, Zorlutuna P, Bao G, Bashir R.  2011.  Patterning the differentiation of C2C12 skeletal myoblasts. Integr Biol (Camb). 3(9):897-909.

Park C, Lee JYoon.  2011.  Role of bone marrow-derived lymphatic endothelial progenitor cells for lymphatic neovascularization. Trends Cardiovasc Med. 21(5):135-40.

Li D, Zhou J, Chowdhury F, Cheng J, Wang N, Wang F.  2011.  Role of mechanical factors in fate decisions of stem cells. Regen Med. 6(2):229-40.

Millet LJ, Park K, Watkins NN, K. Hsia J, Bashir R.  2011.  Separating beads and cells in multi-channel microfluidic devices using dielectrophoresis and laminar flow. J Vis Exp. (48)

Sridharan S, Mir M, Popescu G.  2011.  Simultaneous optical measurements of cell motility and growth. Biomedical Optics ExpressBiomed. Opt. Express. 2(10):2815-2820.

Jeong GSeok, Han S, Shin Y, Kwon GHan, Kamm RD, Lee S-H, Chung S.  2011.  Sprouting angiogenesis under a chemical gradient regulated by interactions with an endothelial monolayer in a microfluidic platform.. Anal Chem. 83(22):8454-9.

Zorlutuna P, Jeong JHyun, Kong H, Bashir R.  2011.  Stereolithography-Based Hydrogel Microenvironments to Examine Cellular Interactions. Adv Funct Mater. 21(19):3642-3651.

Wood LB, Kamm RD, H Asada H.  2011.  Stochastic modeling and identification of emergent behaviors of an Endothelial Cell population in angiogenic pattern formation. The International Journal of Robotics Research. 30(6):659-677.

Cha C, Jeong JHyun, Tang X, Zill AT, Prakash YS, Zimmerman SC, Saif T, Kong H.  2011.  Top-down synthesis of versatile polyaspartamide linkers for single-step protein conjugation to materials.. Bioconjug Chem. 22(12):2377-82.

Cha C, Jeong JHyun, Shim J, Kong H.  2011.  Tuning the dependency between stiffness and permeability of a cell encapsulating hydrogel with hydrophilic pendant chains.. Acta Biomater. 7(10):3719-28.

Anderson SM, Shergill B, Barry ZT, Manousiouthakis E, Chen TT, Botvinick E, Platt MO, M Iruela-Arispe L, Segura T.  2011.  VEGF internalization is not required for VEGFR-2 phosphorylation in bioengineered surfaces with covalently linked VEGF. Integr Biol (Camb). 3(9):887-96.

Li D, Zhou J, Wang L, Shin ME, Su P, Lei X, Kuang H, Guo W, Yang H, Cheng L et al..  2010.  Integrated biochemical and mechanical signals regulate multifaceted human embryonic stem cell functions.. J Cell Biol.. 191(3)

Park K, Millet LJ, Kim N, Li H, Jin X, Popescu G, Aluru NR, K. Hsia J, Bashir R.  2010.  Measurement of adherent cell mass and growth. Proc Natl Acad Sci U S A. 107(48):20691-6.

Bajaj P, Tang X, Saif T, Bashir R.  2010.  Stiffness of the substrate influences the phenotype of embryonic chicken cardiac myocytes. J Biomed Mater Res A. 95(4):1261-9.