Publications

Misra M, Shvartsman SY, Zervantonakis IK.  Submitted.  Bifurications in models of gastrulation. Biophysical Journal.

Levin M.  Submitted.  Bioelectric memory: modeling resting potential bistability in amphibian embryos and mammalian cell.

Glaser DE, McCloskey KE, Viney C.  Submitted.  Biomaterial Contributions for Creating Microvasculature in vitro. Tissue Engineering Part B: Reviews.

Anand SV, M Ali Y, Saif T.  Submitted.  Cell culture on microfabricated one-dimensional polymeric structures for bio-actuator and bio-bot applications.

Levin M.  Submitted.  Changes to K+-channel-dependent patterning during early neurulation: a mechanism underlying craniofacial anomalies in KCNJ2-associated Andersen-Tawil Syndrome.. Human Mutation.

Rico-Varela J, Singh T.  Submitted.  EGF as a New Therapeutic Target for Medulloblastoma Metastasis.

Rico J.  Submitted.  “EGF as a New Therapeutic Target for Medulloblastoma Metastasis” - In Revision [Cell and Molecular Bioengineering Journal].

Beck C, Rico J.  Submitted.  “Microfluidic Measurement of the Effective Diffusivity of Biological Macromolecules” - In Review [ASME Journal of Biomechanical Engineering].

[Anonymous].  Submitted.  Photopatterning of Hydrogel Scaffolds Coupled to Filter Materials Using Stereolithography for Perfused 3D Culture of Hepatocytes.

Ko E, Yu S, Mahmassami Z, Boppart M, Im SG, Bashir R, Kong H.  Submitted.  Reciprocity between Nanogrooved Substrate-Mediated Muscle Maturity and Neurons toward Neuromuscular Junction Formation.

Levin M.  Submitted.  Re-Membering the Body: applications of cognitive science to the bioengineering of regeneration of limbs and other complex organs. Annual Reviews of Bioengineering.

Levin M.  Submitted.  Selective Depolarization Of Transmembrane Potential Alters Muscle Patterning and Muscle Cell Localization In Embryonic Xenopus Laevi.

Griffiths S, Zhang Y, Nerem RM, Fan Y.  Submitted.  Shear stress and inhibition of DNA methylation regulates endothelial markers in human multipotent mesenchymal stromal cells. Tissue Engineering Part A.

[Anonymous].  Submitted.  Shim, J.B., Ankeny, R.F., Kim, H., Nerem, R.M., and Khang, G., “A Study of a Three-Dimensional PLGA Sponge Containing Natural Polymers Co-Cultured with Endothelial and Mesenchymal Stem Cells as a Tissue Engineering Scaffold,” Biomedical Materials (in.

Osterfield M, Wieschaus E, Schüpbach T, Shvartsman SY.  Submitted.  Versatility in three-dimensional epithelial morphogenesis. Current Biology.

Majeed H, Kandel M, Han K, Luo Z, Macias V, Tangella K, Balla A, Popescu G.  In Press.  Breast cancer diagnosis using Spatial Light Interference Microscopy (SLIM). Journal of Biomedical Optics - Special Section on Quantitative Phase Imaging in Medicine.

Nguyen T, Majeed H, Popescu G.  In Press.  Monochromatic and plane wave decomposition of ergodic fields. Optics Letters.

Cvetkovic C, Rich MH, Raman R, Kong H, Bashir R.  2017.  A 3D-printed platform for modular neuromuscular motor units. Microsystems and Nanoengineering. 3

Seo Y, Leong J, Teo JYng, Mitchell JW, Gillette MU, Han B, Lee J, Kong H.  2017.  Active Antioxidizing Particles for On-Demand Pressure-Driven Molecular Release.. ACS Appl Mater Interfaces. 9(41):35642-35650.

Haase K, Kamm RD.  2017.  Advances in on-chip vascularization.. Regen Med. 12(3):285-302.

Vazquez M, Marte O, Barba J, Hubbard K.  2017.  An Approach to Integrating Health Disparities within Undergraduate Biomedical Engineering Education.. Ann Biomed Eng. 45(11):2703-2715.

Park J, Yu Y, Kim J, Qin EC, Kim MJ, Ko E, Kong H.  2017.  Balanced Effects of Surface Reactivity and Self-Association of Bifunctional Polyaspartamide on Stem Cell Adhesion. ACS Omega. 2(4)

Park J, Yu Y, Kim J, Qin EC, Kim M-J, Ko E, Kong H.  2017.  Balanced Effects of Surface Reactivity and Self-Association of Bifunctional Polyaspartamide on Stem Cell Adhesion.. ACS Omega. 2(4):1333-1339.

Cintora P, Arikkath J, Kandel M, Popescu G, Best-Popescu C.  2017.  Cell density modulates intracellular mass transport in neural networks.. Cytometry A. 91(5):503-509.

Shen EM, McCloskey KE.  2017.  Development of Mural Cells: From In Vivo Understanding to In Vitro Recapitulation.. Stem Cells Dev. 26(14):1020-1041.

Kim M.-C., Abeyaratne R., Kamm R.D., Asada H.H..  2017.  Dynamic modeling of cancer cell migration in an extracellular matrix fiber network. American Control Conference (ACC), 2017 . :779-784.

Kim M.C., Abeyaratne R., Kamm R.D., Asada H.H.  2017.  Dynamic modeling of cancer cell migration in an extracellular matrix fiber network . American Control Conference (ACC), 2017 .

Mathews J, Levin M.  2017.  Gap junctional signaling in pattern regulation: Physiological network connectivity instructs growth and form.. Dev Neurobiol. 77(5):643-673.

Evans AA, Bhaduri B, Popescu G, Levine AJ.  2017.  Geometric localization of thermal fluctuations in red blood cells.. Proc Natl Acad Sci U S A. 114(11):2865-2870.

Werley CA, Chien M-P, Gaublomme J, Shekhar K, Butty V, B Yi A, Kralj JM, Bloxham W, Boyer LA, Regev, iv A et al..  2017.  Geometry-dependent functional changes in iPSC-derived cardiomyocytes probed by functional imaging and RNA sequencing.. PLoS One. 12(3):e0172671.

Nguyen TH, Kandel ME, Rubessa M, Wheeler MB, Popescu G.  2017.  Gradient light interference microscopy for 3D imaging of unlabeled specimens.. Nat Commun. 8(1):210.

McCutcheon S, Unachukwu U, Thakur A, Majeska R, Redenti S, Vazquez M.  2017.  In vitro formation of neuroclusters in microfluidic devices and cell migration as a function of stromal-derived growth factor 1 gradients.. Cell Adh Migr. 11(1):1-12.

Cvetkovic C, Ferrall-Fairbanks MC, Ko E, Grant L, Kong H, Platt MO, Bashir R.  2017.  Investigating the Life Expectancy and Proteolytic Degradation of Engineered Skeletal Muscle Biological Machines.. Sci Rep. 7(1):3775.

Kandel ME, Teng KWen, Selvin PR, Popescu G.  2017.  Label-Free Imaging of Single Microtubule Dynamics Using Spatial Light Interference Microscopy.. ACS Nano. 11(1):647-655.

Mayalu M.M., Asada H.H., Kim M.-C..  2017.  Latent space superposition of multiple solutions to predict emergent behaviors of nonlinear cellular systems. American Control Conference (ACC), 2017 . :2146-2151.

Wong L, Pegan JD, Gabela-Zuniga B, Khine M, McCloskey KE.  2017.  Leaf-inspired microcontact printing vascular patterns.. Biofabrication. 9(2):021001.

Min E, Ban S, Wang Y, Bae SChul, Popescu G, Best-Popescu C, Jung W.  2017.  Measurement of multispectral scattering properties in mouse brain tissue.. Biomed Opt Express. 8(3):1763-1770.

Clay NE, Shin K, Ozcellkkale ltug, Lee MKyung, Rich MH, Kim DHyun, Han B, Kong H.  2017.  Modulation of Matrix Softness and Interstitial Flow for 3D Cell Culture Using a Cell-Microenvironment-on-a-Chip System. ACS Biomaterials Science and Engineering. 2(11)

Platt MO.  2017.  Multiplex Cathepsin Zymography to Detect Amounts of Active Cathepsins K, L, S, and V.. Methods Mol Biol. 1626:239-252.

McCutcheon S, Majeska R, Schaffler M, Vazquez M.  2017.  A multiscale fluidic device for the study of dendrite-mediated cell to cell communication.. Biomed Microdevices. 19(3):71.

Ferrall-Fairbanks MC, Barry ZT, Affer M, Shuler MA, Moomaw EW, Platt MO.  2017.  PACMANS: A bioinformatically informed algorithm to predict, design, and disrupt protease-on-protease hydrolysis.. Protein Sci. 26(4):880-890.

Rich MH, Lee MKyung, Ballance WC, Boppart M, Kong H.  2017.  Poly(ethylene glycol)-Mediated Collagen Gel Mechanics Regulates Cellular Phenotypes in a Microchanneled Matrix.. Biomacromolecules. 18(8):2315-2323.

Arora N, Alsous JImran, Guggenheim JW, Mak M, Munera J, Wells JM, Kamm RD, H Asada H, Shvartsman SY, Griffith LG.  2017.  A process engineering approach to increase organoid yield.. Development. 144(6):1128-1136.

Majeed H, Okoro C, Kajdacsy-Balla A, Toussaint KC, Popescu G.  2017.  Quantifying collagen fiber orientation in breast cancer using quantitative phase imaging.. J Biomed Opt. 22(4):46004.

Lee YJae, Cintora P, Arikkath J, Akinsola O, Kandel M, Popescu G, Best-Popescu C.  2017.  Quantitative assessment of neural outgrowth using spatial light interference microscopy.. J Biomed Opt. 22(6):66015.

Majeed H, Sridharan S, Mir M, Ma L, Min E, Jung W, Popescu G.  2017.  Quantitative phase imaging for medical diagnosis.. J Biophotonics. 10(2):177-205.

Shan M, Kandel ME, Popescu G.  2017.  Refractive index variance of cells and tissues measured by quantitative phase imaging.. Opt Express. 25(2):1573-1581.

Zhang Z, Jones AE, Wu W, Kim J, Kang Y, Bi X, Gu Y, Popov IK, Renfrow MB, Vassylyeva MN et al..  2017.  Role of remodeling and spacing factor 1 in histone H2A ubiquitination-mediated gene silencing.. Proc Natl Acad Sci U S A. 114(38):E7949-E7958.

Kandel ME, Fernandes D, Taylor AM, Shakir H, Best-Popescu C, Popescu G.  2017.  Three-dimensional intracellular transport in neuron bodies and neurites investigated by label-free dispersion-relation phase spectroscopy.. Cytometry A. 91(5):519-526.

Melhem MR, Park J, Knapp L, Reinkensmeyer L, Cvetkovic C, Flewellyn J, Lee MKyung, Jensen TWolf, Bashir R, Kong H et al..  2016.  3D Printed Stem-Cell-Laden, Microchanneled Hydrogel Patch for the Enhanced Release of Cell-Secreting Factors and Treatment of Myocardial Infarctions. ACS Biomater. Sci. Eng..

Raman R, Clay NE, Sen S, Melhem M, Qin E, Kong H, Bashir R.  2016.  3D printing enables separation of orthogonal functions within a hydrogel particle.. Biomed Microdevices. 18(3):49.

Hookway TA, Butts JC, Lee E, Tang H, McDevitt TC.  2016.  Aggregate formation and suspension culture of human pluripotent stem cells and differentiated progeny.. Methods. 101:11-20.

Schmidt J, Lee MKyung, Ko E, Jeong JHyun, DiPietro LA, Kong H.  2016.  Alginate Sulfates Mitigate Binding Kinetics of Proangiogenic Growth Factors with Receptors toward Revascularization.. Mol Pharm. 13(7):2148-54.

Adams DSpencer, Uzel SGM, Akagi J, Wlodkowic D, Andreeva V, Yelick PCrotty, Devitt-Lee A, Paré J-F, Levin M.  2016.  Bioelectric signalling via potassium channels: a mechanism for craniofacial dysmorphogenesis in KCNJ2-associated Andersen-Tawil Syndrome.. J Physiol. 594(12):3245-70.

Roh K-H, Nerem RM, Roy K.  2016.  Biomanufacturing of Therapeutic Cells: State of the Art, Current Challenges, and Future Perspectives.. Annu Rev Chem Biomol Eng. 7:455-78.

Rivet CA, Kniss-James AS, Gran MA, Potnis A, Hill A, Lu H, Kemp ML.  2016.  Calcium Dynamics of Ex Vivo Long-Term Cultured CD8+ T Cells Are Regulated by Changes in Redox Metabolism.. PLoS One. 11(8):e0159248.

Boggs K, Venkatesan N, Mederacke I, Komatsu Y, Stice S, Schwabe RF, Mistretta CM, Mishina Y, Liu HXiang.  2016.  Contribution of Underlying Connective Tissue Cells to Taste Buds in Mouse Tongue and Soft Palate. PLoS. 11(1):e0146475.

Beck C, Singh T, Farooqi A, Venkatesh T, Vazquez M.  2016.  Controlled microfluidics to examine growth-factor induced migration of neural progenitors in the Drosophila visual system.. J Neurosci Methods. 262:32-40.

Matthys OB, Hookway TA, McDevitt TC.  2016.  Design Principles for Engineering of Tissues from Human Pluripotent Stem Cells.. Curr Stem Cell Rep. 2(1):43-51.

Spill F, Andasari V, Mak M, Kamm RD, Zaman MH.  2016.  Effects of 3D geometries on cellular gradient sensing and polarization.. Phys Biol. 13(3):036008.

Pietak A, Levin M.  2016.  Exploring Instructive Physiological Signaling with the Bioelectric Tissue Simulation Engine.. Front Bioeng Biotechnol. 4:55.

Bartocci E, Gol EAydin, Haghighi I, Belta C.  2016.  A Formal Methods Approach to Pattern Recognition and Synthesis in Reaction Diffusion Networks. . IEEE Transactions on Control of Network Systems. PP(99)

Guye P, Ebrahimkhani MR, Kipniss N, Velazquez JJ, Schoenfeld E, Kiani S, Griffith LG, Weiss R.  2016.  Genetically engineering self-organization of human pluripotent stem cells into a liver bud-like tissue using Gata6.. Nature Communications. 7:10243.

Pai VP, Martyniuk CJ, Echeverri K, Sundelacruz S, Kaplan DL, Levin M.  2016.  Genome-wide analysis reveals conserved transcriptional responses downstream of resting potential change in Xenopus embryos, axolotl regeneration, and human mesenchymal cell differentiation.. Regeneration (Oxf). 3(1):3-25.

Xue Z, Hennelly S, Doyle B, Gulati AA, Novikova IV, Sanbonmatsu KY, Boyer LA.  2016.  A G-Rich Motif in the lncRNA Braveheart Interacts with a Zinc-Finger Transcription Factor to Specify the Cardiovascular Lineage.. Mol Cell. 64(1):37-50.

Surface LE, Fields PA, Subramanian V, Behmer R, Udeshi N, Peach SE, Carr SA, Jaffe JD, Boyer LA.  2016.  H2A.Z.1 Monoubiquitylation Antagonizes BRD2 to Maintain Poised Chromatin in ESCs.. Cell Rep. 14(5):1142-1155.

Uzel SGM, Platt RJ, Subramanian V, Pearl TM, Rowlands CJ.  2016.  Microfluidic device for the formation of optically excitable, three-dimensional, compartmentalized motor units. Science Advances Journal. 2(8):e1501429.

Levario TJ, Lim B, Shvartsman SY, Lu H.  2016.  Microfluidics for High-Throughput Quantitative Studies of Early Development.. Annu Rev Biomed Eng. 18:285-309.

Liu Y, Lu H.  2016.  Microfluidics in systems biology-hype or truly useful? Curr Opin Biotechnol. 39:215-220.

Nguyen AH, Wang Y, White DE, Platt MO, McDevitt TC.  2016.  MMP-mediated mesenchymal morphogenesis of pluripotent stem cell aggregates stimulated by gelatin methacrylate microparticle incorporation.. Biomaterials. 76:66-75.

Barnes DE, Hwang H, Ono K, Lu H, Ono S.  2016.  Molecular evolution of troponin I and a role of its N-terminal extension in nematode locomotion. 73(3):117-130.

Glaser DE, Turner WS, Madfis N, Wong L, Zamora J, White N, Reyes S, Burns AB, Gopinathan A, McCloskey KE.  2016.  Multifactorial Optimizations for Directing Endothelial Fate from Stem Cells.. PLoS One. 11(12):e0166663.

Hwang H, Barnes DE, Matsunaga Y, Benian GM, Ono S, Lu H.  2016.  Muscle contraction phenotypic analysis enabled by optogenetics reveals functional relationships of sarcomere components in Caenorhabditis elegans.. Sci Rep. 6:19900.

Ugolini GStefano, Rasponi M, Pavesi A, Santoro R, Kamm R, Fiore GBeniamino, Pesce M, Soncini M.  2016.  On-chip assessment of human primary cardiac fibroblasts proliferative responses to uniaxial cyclic mechanical strain.. Biotechnol Bioeng. 113(4):859-69.

E.Bates K, Lu H.  2016.  Optics-Integrated Microfluidic Platforms for Biomolecular Analyses. Biophysical Journal. 110(8):1684-1697.

Raman R, Cvetkovic C, Uzel SGM, Platt RJ, Sengupta P, Kamm RD, Bashir R.  2016.  Optogenetic skeletal muscle-powered adaptive biological machines.. Proc Natl Acad Sci U S A. 113(13):3497-502.

Ma L, Rajshekhar G, Wang R, Bhaduri B, Sridharan S, Mir M, Chakraborty A, Iyer R, Prasanth S, Millet L et al..  2016.  Phase correlation imaging of unlabeled cell dynamics.. Sci Rep. 6:32702.

Durant F, Lobo D, Hammelman J, Levin M.  2016.  Physiological controls of large-scale patterning in planarian regeneration: a molecular and computational perspective on growth and form.. Regeneration (Oxf). 3(2):78-102.

Unachukwu UJohn, Warren A, Li Z, Mishra S, Zhou J, Sauane M, Lim H, Vazquez M, Redenti S.  2016.  Predicted molecular signaling guiding photoreceptor cell migration following transplantation into damaged retina.. Sci Rep. 6:22392.

Bhatt S, Gupta  M K., Khamaisi M, Martinez R, Gritsenko M A., Wagner B K., Guye P, Busskamp V, Shirakawa J, Wu G et al..  2016.  Preserved DNA Damage Checkpoint Pathway Protects against Complications in Long-Standing Type 1 Diabetes. Cell Metabolism. 22(2):239-252.

McCracken JM, Badea A, Kandel ME, A Gladman S, Wetzel DJ, Popescu G, Lewis JA, Nuzzo RG.  2016.  Programming Mechanical and Physicochemical Properties of 3D Hydrogel Cellular Microcultures via Direct Ink Writing.. Adv Healthc Mater. 5(9):1025-39.

Majeed H, Sridharan S, Mir M, Ma L, Min E, Jung W, Popescu G.  2016.  Quantitative phase imaging for medical diagnosis. Journal of Biophotonics. . Biophotonics. 10(2):177-205.

Nguyen TH, Edwards C, Goddard LL, Popescu G.  2016.  Quantitative phase imaging of weakly scattering objects using partially coherent illumination.. Opt Express. 24(11):11683-93.

Pan C, Fan Y.  2016.  Role of H1 linker histones in mammalian development and stem cell differentiation.. Biochim Biophys Acta. 1859(3):496-509.

Misra M, Audoly B, Kevrekidis IG, Shvartsman SY.  2016.  Shape Transformations of Epithelial Shells.. Biophys J. 110(7):1670-8.

Uzel SGM, Amadi OC, Pearl TM, Lee RT, So PTC, Kamm RD.  2016.  Simultaneous or Sequential Orthogonal Gradient Formation in a 3D Cell Culture Microfluidic Platform.. Small. 12(5):612-22.

Mak M, Spill F, Kamm RD, Zaman MH.  2016.  Single-Cell Migration in Complex Microenvironments: Mechanics and Signaling Dynamics.. J Biomech Eng. 138(2):021004.

Kim T, Zhou R, Goddard LL, Popescu G.  2016.  Solving inverse scattering problems in biological samples by quantitative phase imaging. Laser & Photonics Reviews. 10(1):13-39.

Horstmeyer R, Heintzmann R, Popescu G, Waller L, Yang C.  2016.  Standardizing the resolution claims for coherent microscopy. Nature Photonics. 10(2):68-71.

Shan M, Nastasa V, Popescu G.  2016.  Statistical dispersion relation for spatially broadband fields. The Optical Society of America. 41(11):2490-2492.

Teague BP, Guye P, Weiss R.  2016.  Synthetic Morphogenesis.. Cold Spring Harb Perspect Biol. 8(9)

Jiayu L, Liam G, Kong H.  2016.  Tailoring Collagen-Based Matrices for Regenerative Medicine and Tissue Engineering. Material Matters: Sigma-Aldrich. 10(4)

L JCMVega, Lee MKyung, Qin EC, Rich M, Lee KYoung, Kim DHyun, Chung HJung, Leckband DE, Kong H.  2016.  Three Dimensional Conjugation of Recombinant N-Cadherin to a Hydrogel for Anisotropic Neural Growth.. J Mater Chem B. 4(42):6803-6811.

Jackson E.L, Lu H..  2016.  Three-dimensional models for studying development and disease: moving on from organisms to organs-on-a-chip and organoids. Integr. Biol.. 8(6):671-683.

Shan M, Kandel ME, Majeed H, Nastasa V, Popescu G.  2016.  White-light diffraction phase microscopy at doubled space-bandwidth product.. Opt Express. 24(25):29033-29039.

Ceballos S, Kandel M, Sridharan S, Majeed H, Monroy F, Popescu G.  2015.  Active intracellular transport in metastatic cells studied by spatial light interference microscopy. Journal of Biomedical Optics. 20(11):111209.

Anwar MSabieh, Majeed H, Shaheen A.  2015.  Analyzing combinations of circular birefringence, linear birefringence, and elliptical dichroism in magneto-optical rotators. Journal of Modern Optics. 62(1):75-84.

Zhan M, Crane MM, Entchev EV, Caballero A, de Abreu DAndrea Fer, Ch'ng QL, Lu H.  2015.  Automated Processing of Imaging Data through Multi-tiered Classification of Biological Structures Illustrated Using Caenorhabditis elegans.. PLoS Comput Biol. 11(4):e1004194.

He L, Kniss A, San-Miguel A, Rouse T, Kemp M, Lu H.  2015.  An automated programmable platform enabling multiplex dynamic stimuli delivery and cellular response monitoring for high-throughput suspension single-cell signaling studies. Lab Chip. 15(6):1497-1507.

Kang S-K, Hwang S-W, Yu S, Seo J-H, Corbin EA, Shin J, Wie DSeung, Bashir R, Ma Z, Rogers JA.  2015.  Biodegradable Thin Metal Foils and Spin-On Glass Materials for Transient Electronics. Advanced Functional Materials. 25(12):1789-1797.

Lee MKyung, Rich MH, Lee J, Kong H.  2015.  A bio-inspired, microchanneled hydrogel with controlled spacing of cell adhesion ligands regulates 3D spatial organization of cells and tissue.. Biomaterials. 58:26-34.

Lee MKyung, Rich MH, Baek K, Lee J, Kong H.  2015.  Bioinspired Tuning of Hydrogel Permeability-Rigidity Dependency for 3D Cell Culture. Scientific Reports. 5:8948.

Corbin EA, Kong F, Lim CTeck, King WP, Bashir R.  2015.  Biophysical properties of human breast cancer cells measured using silicon MEMS resonators and atomic force microscopy.. Lab Chip. 15(3):839-47.

Anand SV, M Ali Y, Saif T.  2015.  Cell culture on microfabricated one-dimensional polymeric structures for bio-actuator and bio-bot applications. Lab Chip. 15(8):1879-1888.

Kim M-C, Whisler J, Silberberg YR, Kamm RD, H Asada H.  2015.  Cell Invasion Dynamics into a Three Dimensional Extracellular Matrix Fibre Network.. PLoS Comput Biol. 11(10):e1004535.

Mir M, Kim T, Majumder A, Xiang M, Wang R, S Liu C, Gillette MU, Stice S, Popescu G.  2015.  Corrigendum: Label-Free Characterization of Emerging Human Neuronal Networks.. Sci Rep. 5:11311.

Cambria E, Renggli K, Ahrens CC, Cook CD, Kroll C, Krueger AT, Imperiali B, Griffith LG.  2015.  Covalent Modification of Synthetic Hydrogels with Bioactive Proteins via Sortase-Mediated Ligation.. Biomacromolecules. 16(8):2316-26.

Shittu I, Zhu Z, Lu Y, Hutcheson JM, Stice SL, West FD, Donadeu M, Dungu B, Fadlyf AM, Zavala G et al..  2015.  Development, characterization and optimization of a new suspension chicken-induced pluripotent cell line for the production of Newcastle disease vaccine. Biologials. 44(1):24-32.

Jain A.  2015.  Development of microfluidic devices for the manipulation of neuronal synapses. Microfluidic and Compartmentalized Platforms for Neurobiological Research. :127-136.

Kim H, Han JWoong, Lee JYoon, Choi YJin, Sohn Y-D, Song M, Yoon Y-S.  2015.  Diabetic Mesenchymal Stem Cells Are Ineffective for Improving Limb Ischemia Due to Their Impaired Angiogenic Capability.. Cell Transplant. 24(8):1571-84.

Majeed H, Kandel M, Han K, Luo Z, Macias V, Tangella K, Balla A, Popescu G.  2015.  Diagnosis of breast cancer biopsies using quantitative phase imaging. SPIE Photonics West: BiOS - Quantitative Phase Imaging. 9336

Wang R, Lei L, Sridharan S, Wang Y, Levine AJ, Popescu G.  2015.  Dispersion relations of cytoskeleton dynamics. Dove Medical Press. 2016:1-7.

Lim B, Dsilva CJ, Levario TJ, Lu H, Schüpbach T, Kevrekidis IG, Shvartsman SY.  2015.  Dynamics of Inductive ERK Signaling in the Drosophila Embryo.. Curr Biol. 25(13):1784-90.

Pai VP, Lemire JM, Paré J-F, Lin G, Chen Y, Levin M.  2015.  Endogenous gradients of resting potential instructively pattern embryonic neural tissue via Notch signaling and regulation of proliferation.. J Neurosci. 35(10):4366-85.

Chien S, Bashir R, Nerem RM, Pettigrew R.  2015.  Engineering as a new frontier for translational medicine.. Sci Transl Med. 7(281):281fs13.

Lee S, Valmikinathan CM, Byun J, Kim S, Lee G, Mokarram N, S Pai B, Um E, Bellamkonda RV, Yoon Y-S.  2015.  Enhanced therapeutic neovascularization by CD31-expressing cells and embryonic stem cell-derived endothelial cells engineered with chitosan hydrogel containing VEGF-releasing microtubes.. Biomaterials. 63:158-67.

Chan V, Neal D, Uzel SGM, Kim H, Bashir R, H Asada H.  2015.  Fabrication and characterization of optogenetic, multi-strip cardiac muscles. Lab Chip. 15(10):2258-2268.

Gol EAydin, Bartocci E.  2015.  A Formal Methods Approach to Pattern Synthesis in Reaction Diffusion Systems. 53rd IEEE Conference on Decision and Control (CDC), Los Angeles, CA 2014.

Entchev EV, Patel DS, Zhan M, Steele AJ, Lu H, Ch'ng QL.  2015.  A gene-expression-based neural code for food abundance that modulates lifespan.. Elife. 4:e06259.

Lee S-J, Park C, Lee JYoon, Kim S, Kwon PJae, Kim W, Jeon YHeui, Lee E, Yoon Y-S.  2015.  Generation of pure lymphatic endothelial cells from human pluripotent stem cells and their therapeutic effects on wound repair.. Sci Rep. 5:11019.

Lee MKyung, Rich MH, Shkumatov A, Jeong JHyun, Boppart MD, Bashir R, Gillette M.U., Lee J, Kong H.  2015.  Glacier Moraine Formation-Mimicking Colloidal Particle Assembly in Microchanneled, Bioactive Hydrogel for Guided Vascular Network Construction. Advanced Healthcare Materials. 4(2):195-201.

Nguyen T, Majeed H, Edwards C, Do M, Goddard L, Popescu G.  2015.  Halo-free quantitative phase imaging with partially coherent illumination. SPIE Photonics West: BiOS - Quantitative Phase Imaging. 9336

Majeed H, Kandel M, Bhaduri B, Han K, Luo Z, Tangella K, Popescu G.  2015.  High throughput imaging of blood smears using white light diffraction phase microscopy. SPIE Photonics West: BiOS - Quantitative Phase Imaging. 9336

Chavez A, Scheiman J, Vora S, Pruitt BW, Tuttle M, Iyer EPR, Lin S, Kiani S, Guzman CD, Wiegand DJ et al..  2015.  Highly efficient Cas9-mediated transcriptional programming.. Nat Methods. 12(4):326-8.

Raman R, Bhaduri B, Mir M, Shkumatov A, Lee MKyung, Popescu G, Kong H, Bashir R.  2015.  High-Resolution Projection Microstereolithography for Patterning of Neovasculature. Advance Healthcare Materials. 5(5):610-619.

Belair DG, Whisler JA, Valdez J, Velazquez J, Molenda JA, Vickerman V, Lewis R, Daigh C, Hansen TD, Mann DA et al..  2015.  Human vascular tissue models formed from human induced pluripotent stem cell derived endothelial cells.. Stem Cell Rev. 11(3):511-25.

Gray WD, French KM, Ghosh-Choudhary S, Maxwell JT, Brown ME, Platt MO, Searles CD, Davis ME.  2015.  Identification of therapeutic covariant microRNA clusters in hypoxia-treated cardiac progenitor cell exosomes using systems biology.. Circ Res. 116(2):255-63.

Baek K, Liang J, Lim WTing, Zhao H, Kim DHyun, Kong H.  2015.  In Situ Assembly of Antifouling/Bacterial Silver Nanoparticle-Hydrogel Composites with Controlled Particle Release and Matrix Softening. ACS Applied Materials & Interfaces. 7(28):15359-15367.

Baek K, Clay N, Qin EC, Sullivan KM, Kim DHyun, Kong H.  2015.  In situ assembly of the collagen–polyacrylamide interpenetrating network hydrogel: Enabling decoupled control of stiffness and degree of swelling. European Polymer Journal.

Lobo D, Levin M.  2015.  Inferring regulatory networks from experimental morphological phenotypes: a computational method reverse-engineers planarian regeneration.. PLoS Comput Biol. 11(6):e1004295.

Levario TJ, Zhao C, Rouse T, Shvartsman SY, Lu H.  2015.  An integrated platform for large-scale data collection and precise perturbation of live Drosophila embryos. Nature Research Journal. 6:21366.

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Liao X, Lu S, Zhuo Y, Winter C, Xu W, Wang Y.  2012.  Visualization of Src and FAK activity during the differentiation process from HMSCs to osteoblasts. PLoS One. 7(8):e42709.

Mir M, S Babacan D, Bednarz M, Do MN, Golding I, Popescu G.  2012.  Visualizing Escherichia coli sub-cellular structure using sparse deconvolution Spatial Light Interference Tomography.. PLoS One. 7(6):e39816.

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Mir M, Tangella K, Popescu G.  2011.  Blood testing at the single cell level using quantitative phase and amplitude microscopy.. Biomed Opt Express. 2(12):3259-66.

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Liang Y, Jeong JHyun, DeVolder RJ, Cha C, Wang F, Tong YWah, Kong H.  2011.  A cell-instructive hydrogel to regulate malignancy of 3D tumor spheroids with matrix rigidity. Biomaterials. 32(35):9308-15.

Neal D, H Asada H.  2011.  Co-fabrication of live skeletal muscles as actuators in A millimeter scale mechanical system. 2011 IEEE International Conference on Robotics and Automation (ICRA).

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Wang R, Wang Z, Leigh J, Sobh N, Millet LJ, Gillette M.U., Levine AJ, Popescu G.  2011.  One-dimensional deterministic transport in neurons measured by dispersion-relation phase spectroscopy. J Phys Condens Matter. 23(37):374107.

Mir M, Wang Z, Shen Z, Bednarz M, Bashir R, Golding I, Prasanth SG, Popescu G.  2011.  Optical measurement of cycle-dependent cell growth. Proc Natl Acad Sci U S A. 108(32):13124-9.

Millet LJ, Collens MB, Perry GLW, Bashir R.  2011.  Pattern analysis and spatial distribution of neurons in culture. Integr Biol (Camb). 3(12):1167-78.

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Cha C, Jeong JHyun, Tang X, Zill AT, Prakash YS, Zimmerman SC, Saif T, Kong H.  2011.  Top-down synthesis of versatile polyaspartamide linkers for single-step protein conjugation to materials.. Bioconjug Chem. 22(12):2377-82.

Cha C, Jeong JHyun, Shim J, Kong H.  2011.  Tuning the dependency between stiffness and permeability of a cell encapsulating hydrogel with hydrophilic pendant chains.. Acta Biomater. 7(10):3719-28.

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